genome.fa.s14741.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014741.1 Kokia drynarioides strain JFW-HI SEQ_129780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60951

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--10447	216	47.9	215	78	6	9039	38	13	18	28	1.89
1--10447	653	16.0	644	82	5	9174	38	13	18	28	1.89
11514--11612	39	2.5	39	91	0	162	53	15	5	26	1.62
14719--14797	31	2.6	31	90	5	119	3	29	2	64	1.24
14706--14765	20	3.2	19	72	15	54	3	28	1	66	1.17
14731--14776	11	4.4	11	75	10	51	2	28	4	65	1.23
14772--14819	20	2.3	20	85	3	60	6	20	0	72	1.05
17681--17713	10	3.3	10	95	0	57	30	3	48	18	1.63
18006--18068	32	2.0	32	90	0	99	39	19	9	31	1.83
18114--18212	39	2.5	39	93	0	171	53	16	5	25	1.63
18273--18305	8	4.0	8	96	4	57	63	12	0	24	1.28
18596--25845	437	16.7	428	77	7	6145	38	14	18	28	1.90
18596--25845	216	33.4	215	78	7	6151	38	14	18	28	1.90
18596--25797	868	8.3	862	80	5	6830	39	14	18	28	1.90
24674--25034	197	1.8	197	86	3	521	40	12	18	29	1.87
24871--25858	218	4.5	217	78	5	904	38	13	18	29	1.89
25933--29399	216	15.7	216	76	8	2846	39	13	17	28	1.88
33058--33089	16	2.0	16	100	0	64	43	18	6	31	1.75
34724--34885	46	3.5	46	73	0	144	31	16	20	31	1.95
37163--37216	16	3.4	16	81	0	63	27	27	7	37	1.84
37172--37225	16	3.4	16	72	7	56	25	29	5	38	1.79
43345--43845	24	20.9	24	79	1	511	34	15	24	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45922--46232	106	2.9	107	87	0	444	33	21	20	24	1.97
46170--46258	34	2.6	35	76	5	92	33	25	22	17	1.96
51404--51437	10	3.5	10	84	8	52	88	0	11	0	0.52
51402--51437	14	2.5	14	86	4	54	88	0	11	0	0.50
51403--51450	14	3.3	14	80	11	51	83	0	16	0	0.65
51402--51467	17	4.2	16	83	11	59	78	0	16	4	0.90
53167--53358	96	2.0	96	84	6	255	36	13	19	30	1.89
53617--53781	58	2.8	59	77	8	142	32	6	29	32	1.82
53733--54146	30	13.9	29	80	8	397	32	3	29	35	1.73
53732--54115	59	6.5	59	88	2	502	32	2	29	35	1.72
54896--54948	26	2.1	25	92	3	88	15	24	1	58	1.47
55942--56023	17	4.9	17	72	8	60	48	3	3	43	1.38
56409--56513	50	2.1	50	85	0	138	46	16	18	19	1.84
56496--57484	50	19.8	50	73	5	719	38	12	25	22	1.90
59340--59368	4	7.2	4	100	0	58	24	0	0	75	0.80

Tables:   1

The End!