genome.fa.s14745.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014745.1 Kokia drynarioides strain JFW-HI SEQ_129784, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  532331

Tables:   1   2   

This is table  1  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5272--5345	31	2.4	30	80	8	78	48	9	9	32	1.68
5606--5642	6	6.3	6	90	6	58	51	18	13	16	1.76
14383--14419	17	2.2	17	90	9	58	29	0	5	64	1.15
15258--15298	22	1.9	21	85	5	55	17	4	14	63	1.47
18423--18456	3	11.3	3	100	0	68	32	35	0	32	1.58
19474--19520	14	3.5	13	77	11	51	23	4	2	70	1.16
19534--19596	19	3.4	19	72	16	60	30	1	1	66	1.10
19653--19695	14	3.0	14	76	6	50	25	9	4	60	1.47
19643--19713	29	2.4	31	74	13	76	23	7	4	64	1.36
30742--31444	49	14.3	49	75	6	433	43	17	18	20	1.88
30734--31371	147	4.3	146	74	8	490	43	17	17	21	1.88
31774--31819	3	15.3	3	100	0	92	32	0	0	67	0.91
31776--31828	6	8.4	7	95	2	55	30	0	0	69	0.88
32460--32510	25	2.0	25	100	0	102	35	3	41	19	1.70
36285--36422	69	2.0	69	100	0	276	50	11	18	18	1.76
52192--52236	23	2.0	23	86	8	65	44	11	0	44	1.39
53282--53324	21	2.0	21	100	0	86	67	9	13	9	1.42
59382--59619	121	2.0	121	97	0	449	41	14	15	28	1.87
61203--61248	23	2.0	23	100	0	92	56	8	8	26	1.58
64500--64538	19	2.0	20	85	5	53	33	25	20	20	1.97
68122--68181	30	2.0	30	100	0	120	26	20	13	40	1.89
75692--75766	4	19.2	4	80	15	63	70	1	2	25	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98783--98855	38	1.9	38	94	0	128	30	24	6	38	1.81
98982--99487	207	2.4	206	79	4	561	29	22	14	33	1.93
101530--101569	19	2.1	19	90	0	62	30	15	30	25	1.95
102295--102326	16	2.0	16	93	0	55	21	0	0	78	0.76
110472--110510	16	2.4	17	86	4	53	23	10	15	51	1.73
128351--128389	19	2.1	19	100	0	78	25	15	20	38	1.92
131718--131759	3	14.0	3	80	9	50	69	0	30	0	0.89
139669--139729	24	2.5	24	84	7	70	50	1	37	9	1.45
140566--140612	24	2.0	24	87	4	69	53	8	10	27	1.64
147434--147461	13	2.2	13	100	0	56	21	39	17	21	1.93
156881--157121	51	4.6	51	84	5	304	27	22	14	34	1.94
156931--157121	106	1.8	106	91	0	319	27	23	14	34	1.94
172760--172801	21	2.0	22	86	13	61	9	11	28	50	1.70
173050--173109	26	2.3	26	97	2	113	6	10	6	76	1.15
175535--175604	3	23.3	3	100	0	140	32	0	0	67	0.91
181117--181169	22	2.4	22	90	0	79	35	28	22	13	1.92
181128--181171	22	2.0	22	100	0	88	31	27	22	18	1.97
187683--187729	21	2.2	20	85	7	58	63	2	8	25	1.34
192935--193317	23	16.6	23	88	1	561	34	5	14	45	1.68
192935--193317	46	8.3	46	94	0	631	34	5	14	45	1.68
193479--193503	3	8.3	3	100	0	50	64	0	0	36	0.94
195950--196012	30	2.1	31	84	3	83	41	3	4	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205910--205934	6	4.2	6	100	0	50	32	0	32	36	1.58
207853--207927	23	2.9	25	80	13	82	65	18	5	10	1.42
208768--208810	9	4.8	9	76	0	50	46	13	4	34	1.65
235059--235107	21	2.3	21	89	0	71	26	32	14	26	1.94
235741--235830	17	5.1	17	82	2	90	34	31	18	15	1.93
237541--237608	34	2.0	34	100	0	136	20	32	20	26	1.97
240585--240620	17	2.1	17	94	0	63	33	25	22	19	1.97
246990--247028	17	2.3	17	86	8	53	15	15	25	43	1.86
258858--258932	38	1.9	39	86	2	107	38	17	10	33	1.84
273851--273961	54	2.1	54	87	0	159	29	18	25	26	1.98
284086--284118	15	2.1	16	88	5	50	21	12	6	60	1.53
284417--284444	6	4.7	6	100	0	56	82	0	0	17	0.68
284671--284876	102	2.0	102	98	0	394	21	16	16	45	1.86
285008--285181	60	2.9	60	76	7	176	37	18	6	37	1.76
285010--285200	30	6.5	28	77	12	136	38	19	6	35	1.78
286660--286724	29	2.2	30	83	8	80	38	0	21	40	1.54
291422--291775	70	5.1	70	73	5	286	29	25	16	28	1.97
291638--291769	69	1.9	69	81	6	160	28	25	15	31	1.95
300260--300334	37	2.0	37	97	0	141	26	12	10	50	1.72
303065--303098	18	1.9	17	88	5	50	23	11	8	55	1.63
314463--314492	15	1.9	16	93	6	53	36	0	0	63	0.95
316109--316155	22	2.1	22	81	14	53	34	21	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330917--331244	165	2.0	165	99	0	647	35	21	14	28	1.92
335266--335306	21	2.0	21	85	0	55	12	0	60	26	1.31
341135--341166	13	2.4	14	94	5	57	84	0	0	15	0.63
345392--345616	37	6.1	37	84	3	274	35	31	19	14	1.91
345392--345616	74	3.0	74	88	1	308	35	31	19	14	1.91
345392--345616	111	2.0	111	86	1	317	35	31	19	14	1.91
346029--346075	20	2.4	19	85	3	58	27	17	2	53	1.55
348209--348349	55	2.6	55	87	3	203	34	22	14	29	1.93
348209--348391	55	3.4	54	85	5	174	35	21	15	27	1.93
352771--352814	23	2.0	22	83	16	56	15	11	27	45	1.81
358388--358444	27	2.1	27	90	0	87	29	40	3	26	1.73
359697--359779	39	2.1	39	82	4	96	21	37	21	19	1.94
360478--360666	28	7.2	27	69	16	110	20	28	15	35	1.93
360477--360666	52	3.7	52	85	2	247	21	28	15	35	1.93
360508--360653	24	5.8	24	71	12	112	19	29	17	34	1.94
366485--366591	26	4.2	26	81	4	128	44	14	16	23	1.85
366555--366668	50	2.3	50	84	0	147	37	14	28	18	1.91
366519--366642	26	4.8	26	75	7	119	40	13	25	20	1.89
366638--366698	30	2.0	30	90	0	95	34	19	31	14	1.92
366588--366748	82	2.0	81	82	2	198	35	14	30	19	1.92
366668--366775	52	2.1	52	82	0	126	36	13	26	23	1.92
366739--366851	49	2.2	50	85	7	156	38	14	23	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366761--366857	49	2.0	49	97	0	185	36	15	24	23	1.94
366765--366872	49	2.2	49	88	0	162	37	16	24	21	1.93
366833--366896	24	2.7	24	85	0	74	37	17	28	17	1.92
369913--369983	12	6.1	12	74	8	58	69	21	2	7	1.26
369920--370094	23	7.9	22	76	10	124	67	20	5	6	1.35
369920--370004	35	2.4	35	78	3	82	69	17	4	8	1.31
369929--370090	43	3.7	43	76	8	139	67	19	6	6	1.36
369928--370092	22	7.4	23	73	18	77	67	20	6	6	1.35
370579--370971	52	7.6	53	70	20	233	41	12	1	44	1.50
370507--371019	205	2.5	203	84	6	633	41	12	1	44	1.52
370839--370917	26	3.0	25	78	8	86	43	10	0	46	1.37
370484--371019	105	5.2	105	80	6	508	41	12	1	43	1.52
370596--371019	53	8.2	49	69	21	210	41	13	0	44	1.50
371887--371981	30	3.2	30	93	0	163	22	5	17	54	1.63
375455--375507	22	2.4	22	84	6	72	20	24	28	26	1.99
375538--375612	26	2.7	27	73	8	80	30	13	24	32	1.93
378815--379037	51	4.3	51	84	6	272	27	22	15	34	1.94
384891--385110	30	7.4	28	80	9	190	35	20	4	40	1.72
384889--385031	61	2.4	60	82	5	173	37	21	2	38	1.68
384894--385099	61	3.4	60	79	7	170	35	18	4	41	1.70
388193--388223	2	15.5	2	100	0	62	48	0	0	51	1.00
407035--407063	12	2.4	12	100	0	58	27	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407209--407254	24	1.9	23	86	8	65	56	6	4	32	1.45
408252--408304	12	4.6	11	84	9	54	7	16	0	75	1.02
408271--408302	12	2.6	12	95	5	55	12	9	0	78	0.97
408286--408317	10	3.4	10	83	16	50	12	9	0	78	0.97
410827--410869	14	3.2	13	81	15	52	72	0	2	25	0.97
410852--410897	22	2.1	22	83	0	56	78	2	2	17	0.96
411959--412004	24	1.9	23	86	8	65	56	6	4	32	1.45
413887--413937	21	2.4	22	81	15	63	27	29	15	27	1.96
414619--414816	106	1.9	107	84	3	274	37	21	13	27	1.91
414576--414816	54	4.6	53	85	4	267	37	21	14	26	1.92

Tables:   1   2