genome.fa.s14753.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014753.1 Kokia drynarioides strain JFW-HI SEQ_129792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  729234

Tables:   1   2   

This is table  2  of  2  ( 220 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452724--453374	149	4.5	143	84	7	767	45	9	3	42	1.52
453038--453103	31	2.2	28	82	12	71	56	7	1	34	1.37
453217--453256	19	2.2	18	86	4	53	52	5	2	40	1.37
453260--453307	22	2.2	22	85	10	64	43	6	0	50	1.27
453118--453300	46	3.8	48	71	13	144	43	7	2	45	1.46
452724--453374	296	2.2	290	85	6	841	45	9	3	42	1.52
453787--453815	3	9.7	3	100	0	58	34	0	31	34	1.58
454111--454194	31	2.8	30	80	10	82	60	4	3	30	1.34
457179--457248	36	2.0	36	91	2	115	44	12	15	27	1.83
459674--459723	23	2.2	24	79	17	61	52	0	8	40	1.31
461321--461369	15	3.3	15	78	16	57	26	6	28	38	1.80
461407--461483	36	2.2	36	90	2	120	44	14	15	25	1.84
462046--462096	18	2.9	18	79	2	59	64	5	1	27	1.27
463122--463182	29	2.1	29	90	3	97	59	0	0	40	0.98
463541--463573	16	2.1	16	94	0	57	48	6	0	45	1.27
466368--466441	20	3.5	20	81	5	76	48	12	5	33	1.63
467442--467517	38	2.0	38	94	5	136	23	23	23	28	1.99
470504--470552	19	2.6	18	83	9	53	34	10	12	42	1.76
478902--478927	3	8.7	3	100	0	52	30	0	0	69	0.89
479639--479716	21	3.5	21	72	19	61	65	2	6	25	1.29
479658--479692	10	3.4	10	84	7	52	74	0	5	20	1.02
479645--479678	15	2.3	15	89	0	50	67	2	5	23	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480269--480324	30	1.9	29	82	7	69	51	5	1	41	1.35
480384--480421	19	2.0	20	89	5	60	42	13	0	44	1.43
480385--480430	19	2.3	21	78	14	53	43	10	0	45	1.39
480253--480755	145	3.4	143	82	5	535	45	10	3	40	1.54
481158--481191	12	2.8	12	100	0	68	50	0	14	35	1.44
481156--481190	18	1.9	18	94	0	52	54	0	14	31	1.40
486324--486374	21	2.4	21	87	6	68	29	23	13	33	1.93
487959--488000	21	2.0	21	86	9	59	66	0	7	26	1.17
493468--493505	18	2.1	18	100	0	76	42	5	15	36	1.70
496065--496115	23	2.2	23	82	6	59	23	7	11	56	1.61
500387--500438	18	3.0	18	86	10	56	32	0	0	67	0.91
500404--500438	16	2.2	16	89	0	52	28	0	0	71	0.86
501317--501360	22	2.0	22	100	0	88	50	9	13	27	1.72
508665--508711	24	2.0	24	91	0	76	4	21	8	65	1.37
521220--521814	297	2.0	297	90	0	940	36	20	13	29	1.91
523457--523520	17	3.8	17	75	19	62	56	17	10	15	1.67
535198--535237	3	13.3	3	100	0	80	32	0	0	67	0.91
544025--544073	21	2.3	22	82	10	66	71	8	0	20	1.11
544080--544113	15	2.4	14	85	9	50	70	2	0	26	1.01
544198--544228	15	2.1	15	93	0	53	54	6	0	38	1.26
544555--544610	26	2.0	26	90	10	85	30	0	3	66	1.09
545541--545611	33	2.2	33	85	7	94	52	5	2	39	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546240--546297	30	1.9	30	89	0	89	53	0	0	46	1.00
548442--548509	6	11.7	6	69	12	52	47	14	14	23	1.82
548441--548525	29	2.9	29	87	0	125	45	12	16	24	1.82
549284--549407	41	3.0	41	87	2	176	32	34	14	18	1.91
554213--554300	11	8.5	11	71	17	57	22	3	3	70	1.17
554194--554245	18	2.8	18	85	2	59	25	3	1	69	1.16
562800--563042	50	4.9	50	75	5	159	39	17	21	21	1.93
562819--563036	100	2.2	100	78	1	222	40	17	20	21	1.92
562989--563353	50	7.3	50	81	2	295	40	15	18	25	1.90
562989--563354	99	3.7	99	79	6	357	40	15	18	25	1.90
567072--567101	9	3.4	9	95	4	53	60	13	0	26	1.34
578227--578263	19	2.0	20	89	10	60	37	2	0	59	1.12
585693--585735	19	2.2	19	84	12	52	20	9	13	55	1.66
589817--589871	19	2.8	19	70	22	51	27	3	1	67	1.17
598244--598321	28	3.0	28	71	24	80	55	0	0	44	0.99
599319--599397	38	2.1	38	95	0	140	37	7	13	40	1.74
599396--599464	30	2.3	29	82	5	75	34	7	8	49	1.61
601133--601204	35	2.1	35	100	0	144	27	19	20	31	1.97
602892--602928	13	2.7	14	87	8	58	0	43	0	56	0.99
619012--619044	6	5.5	6	92	0	57	48	0	48	3	1.17
626073--626113	21	1.9	21	85	5	55	43	0	0	56	0.99
635667--635740	37	2.0	37	100	0	148	37	10	27	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639068--639127	23	2.6	23	83	0	84	25	16	15	43	1.86
639902--639943	22	1.9	22	85	0	57	23	38	4	33	1.76
644264--644331	29	2.3	29	89	0	109	23	23	32	20	1.98
644264--644345	29	2.8	29	85	3	85	24	23	30	21	1.99
644419--644559	39	3.6	38	74	5	131	41	21	14	21	1.89
644419--644562	78	1.8	78	83	5	193	41	21	14	22	1.89
644544--644636	39	2.4	39	100	0	186	27	22	24	24	2.00
658453--658572	39	3.1	39	75	4	125	38	21	15	25	1.92
658423--658570	78	1.9	78	84	0	197	40	20	14	25	1.89
663363--663399	19	2.0	19	89	5	58	72	2	0	24	0.97
664041--664084	22	2.0	21	83	12	54	52	4	2	40	1.34
666224--666255	17	1.9	16	93	6	55	59	0	40	0	0.97
667924--667971	23	2.1	23	85	14	64	62	2	0	35	1.07
669494--669537	21	2.0	21	82	4	52	15	2	11	70	1.26
673931--673975	21	2.2	20	84	4	54	11	6	24	57	1.57
674082--674124	22	1.9	22	85	4	59	44	6	11	37	1.68
677172--677372	107	1.9	107	91	2	332	40	4	31	22	1.76
685783--685849	17	3.9	17	76	0	62	46	11	19	22	1.82
687298--687336	18	2.3	17	86	8	53	12	17	23	46	1.83
695751--695789	21	1.9	20	89	5	60	51	0	30	17	1.46
703392--703673	109	2.6	109	86	0	375	26	17	24	31	1.97
705734--705767	12	2.8	12	86	13	52	14	8	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705735--705769	17	2.0	18	88	5	54	17	5	0	77	0.96
712117--712149	15	2.2	15	89	10	50	12	3	3	81	0.91
712727--712786	18	3.2	18	79	13	50	68	5	16	10	1.35
712744--712784	21	2.0	21	90	0	64	63	4	19	12	1.46
714461--714564	42	2.5	42	79	3	111	22	21	33	23	1.97
718026--718095	35	2.0	35	94	0	122	25	17	21	35	1.95
721457--721527	30	2.4	30	83	2	90	47	21	14	16	1.81
721723--721753	3	10.3	3	92	0	53	29	0	67	3	1.06
723401--723438	19	1.9	19	89	5	58	0	23	5	71	1.07
723495--723534	21	1.9	21	89	0	62	15	20	10	55	1.68
726953--727107	55	2.8	56	80	10	174	41	2	3	51	1.34
727192--727291	39	2.6	39	83	0	119	40	25	3	32	1.71

Tables:   1   2

The End!