genome.fa.s14761.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014761.1 Kokia drynarioides strain JFW-HI SEQ_129800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255316

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204580--204619	9	4.4	9	100	0	80	80	10	0	10	0.92
204580--204629	9	5.4	9	90	4	55	82	8	2	8	0.93
205044--205223	42	4.3	42	89	0	252	21	23	22	32	1.98
205037--205223	84	2.2	84	89	1	286	21	22	22	33	1.98
205192--205246	28	2.0	28	92	0	92	16	27	14	41	1.87
205108--205453	112	3.0	112	82	8	363	20	21	21	35	1.96
205155--205293	70	2.0	70	84	2	181	20	22	19	38	1.94
205071--205369	154	1.9	154	92	1	501	20	22	21	35	1.96
205220--205461	42	5.8	42	89	0	331	21	21	22	35	1.96
205931--205968	3	12.7	3	100	0	76	34	0	0	65	0.93
206377--206793	137	2.9	135	79	13	433	43	2	8	45	1.49
206512--206882	152	2.5	150	88	4	518	42	2	8	46	1.47
206894--206940	19	2.3	21	75	7	53	44	2	10	42	1.51
206786--206991	101	2.0	100	89	0	313	37	1	12	48	1.53
206504--206998	152	3.3	152	79	8	492	41	2	9	46	1.49
208025--208504	240	2.0	240	93	0	827	35	6	15	42	1.73
210965--211021	24	2.3	25	81	3	71	3	31	0	64	1.10
212587--212687	50	2.0	50	98	0	193	36	22	8	31	1.85
214608--214757	24	6.2	24	74	1	77	36	14	25	24	1.92
214610--214788	48	3.7	48	79	4	182	35	15	25	23	1.94
214645--214783	24	5.8	24	76	5	129	34	16	28	20	1.94
215469--215511	21	2.0	22	86	4	61	32	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221681--221843	80	2.0	80	83	4	204	33	23	19	23	1.97
221880--222029	81	1.9	81	83	8	198	29	23	22	25	1.99
224175--224423	24	10.4	24	83	0	273	37	16	25	19	1.93
225126--225175	21	2.4	21	100	0	100	36	12	18	34	1.87
225177--225214	18	2.1	18	100	0	76	10	21	10	57	1.61
227443--227499	3	19.0	3	81	0	69	31	3	31	33	1.75
229997--230058	24	2.6	24	81	0	79	48	12	12	25	1.77
230463--230538	38	2.0	38	97	0	143	26	25	13	35	1.92
239857--239926	23	3.0	23	82	2	86	42	14	11	31	1.81
244416--244457	3	13.7	3	95	5	75	33	0	0	66	0.92
244416--244516	9	9.8	10	74	22	70	27	1	3	66	1.20
244448--244515	28	2.4	27	81	15	77	23	2	5	67	1.26
244785--244819	18	1.9	18	88	0	52	31	0	5	62	1.18
244809--244862	23	2.3	24	81	9	67	25	3	11	59	1.48

Tables:   1   2

The End!