genome.fa.s14808.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014808.1 Kokia drynarioides strain JFW-HI SEQ_129850, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  421509

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269372--269453	43	1.9	43	80	9	96	62	3	1	32	1.21
274613--274652	6	6.7	6	97	0	62	27	35	17	20	1.95
279238--279331	41	2.3	41	92	0	152	38	23	6	31	1.80
279696--279747	25	2.1	25	100	0	104	25	28	19	26	1.98
293150--293198	25	2.0	25	84	8	64	61	4	8	26	1.42
294687--294801	11	10.4	11	66	24	55	54	3	1	40	1.27
302987--303515	59	9.1	58	71	15	301	31	17	14	37	1.90
303054--303262	105	2.0	105	88	2	312	32	18	12	36	1.88
303186--303508	61	5.4	61	72	12	245	31	14	13	40	1.85
303154--303529	120	3.1	121	79	10	412	30	16	14	39	1.88
317441--317473	17	1.9	17	93	0	57	24	3	0	72	0.98
319574--319618	19	2.3	20	78	17	51	37	2	4	55	1.32
329413--329439	4	6.8	4	100	0	54	25	0	22	51	1.48
333583--333820	120	2.0	119	85	2	325	26	26	13	34	1.93
338767--338804	20	2.0	20	94	5	69	60	5	0	34	1.19
346016--346044	11	2.6	11	100	0	58	48	31	0	20	1.50
356607--356636	14	2.2	14	94	5	53	36	10	23	30	1.87
358806--358948	40	3.5	40	80	4	153	40	21	18	18	1.91
358926--359178	41	6.1	41	78	4	240	37	13	26	21	1.91
358886--359188	123	2.5	122	81	3	349	37	15	25	21	1.92
360568--360753	41	4.5	41	79	6	171	45	15	20	18	1.86
360563--360753	81	2.3	83	78	6	210	45	15	20	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362727--362755	2	14.5	2	100	0	58	51	48	0	0	1.00
363773--363879	43	2.5	43	81	3	117	26	10	27	36	1.88
364617--364672	27	2.1	27	100	0	112	37	17	16	28	1.91
370895--370991	48	2.0	50	95	4	180	41	5	8	45	1.56
371392--371538	75	2.0	75	87	0	213	44	8	13	34	1.74
374737--374782	15	3.0	15	84	12	58	2	21	0	76	0.90
375364--375407	20	2.3	20	88	7	65	56	11	15	15	1.66
384128--384544	138	3.0	138	87	4	610	47	5	6	41	1.52
390055--390098	23	1.9	23	100	0	88	18	13	13	54	1.71
390476--391031	138	4.0	138	90	1	850	44	5	8	41	1.58
390568--390784	71	3.1	71	63	21	168	47	5	7	39	1.56
391007--391150	73	2.0	74	90	1	227	34	12	8	45	1.72
393734--393884	57	2.6	57	83	6	189	47	9	19	23	1.79
397934--398185	25	9.7	26	75	9	219	26	13	23	36	1.92
397934--398209	52	5.3	53	82	6	334	25	14	23	36	1.93
400762--400816	25	2.2	26	83	3	67	9	20	3	67	1.34
400798--400831	17	2.1	17	88	5	52	11	11	0	76	1.02
400798--400840	16	2.7	16	82	10	52	13	11	0	74	1.07
400864--400916	26	2.0	26	82	7	63	54	5	1	37	1.35
400897--400932	18	2.0	18	89	10	56	66	2	0	30	1.06
403696--403730	17	1.9	17	88	11	52	42	0	0	57	0.99
405895--405939	21	2.2	20	84	4	54	20	37	17	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406975--407299	109	3.0	109	82	0	373	32	24	16	26	1.96
413462--413497	19	1.9	19	88	5	56	19	0	16	63	1.30
414311--414449	11	11.9	12	75	14	69	66	22	5	5	1.35
414369--414397	15	1.9	15	100	0	58	62	20	10	6	1.50
414297--414451	44	3.4	46	79	12	142	65	22	5	6	1.36
414367--414478	34	3.1	34	77	11	100	66	20	7	6	1.39
414315--414449	23	5.8	22	68	20	71	65	22	5	5	1.36
414372--414472	12	8.4	12	73	11	57	65	19	7	6	1.42

Tables:   1   2

The End!