genome.fa.s14826.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014826.1 Kokia drynarioides strain JFW-HI SEQ_129868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  591985

Tables:   1   2   

This is table  1  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6436--6479	6	7.3	6	100	0	88	0	50	15	34	1.45
8304--8384	31	2.7	31	78	3	85	40	14	12	32	1.83
16280--16361	23	3.6	22	85	8	101	13	25	23	37	1.91
16326--16400	39	1.9	39	88	0	114	12	22	21	44	1.85
16365--16454	22	3.9	23	70	17	69	13	22	17	46	1.83
16375--16426	25	2.1	25	82	7	61	11	25	17	46	1.81
18221--18254	11	2.8	12	86	13	52	58	0	8	32	1.29
18221--18266	23	2.0	24	82	4	58	54	4	6	34	1.46
23245--23432	92	2.0	93	91	2	306	39	13	20	26	1.90
26604--26661	29	2.0	29	86	3	80	29	0	17	53	1.44
30550--30588	12	3.2	12	85	3	51	71	0	0	28	0.86
32833--32887	21	2.6	21	82	0	56	30	23	10	34	1.89
32965--33021	21	2.5	24	86	8	75	40	28	5	26	1.77
33602--33810	51	4.0	51	86	3	276	30	23	13	32	1.93
33602--33810	103	2.0	104	85	4	280	30	23	13	32	1.93
37209--37260	20	2.7	20	85	11	65	32	0	7	59	1.26
42186--42276	28	3.3	28	77	13	91	53	0	1	45	1.07
42192--42288	28	3.3	29	72	21	85	51	0	1	47	1.07
43272--43303	2	16.0	2	100	0	64	50	0	50	0	1.00
43704--43780	24	3.2	24	66	0	73	44	2	12	40	1.57
43686--43794	48	2.2	48	95	1	191	38	2	10	48	1.51
53352--53408	17	3.4	17	90	0	87	43	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53359--53412	23	2.3	24	78	15	60	46	0	1	51	1.11
53446--53501	15	3.8	14	79	9	58	46	30	10	12	1.76
54029--54056	3	9.3	3	100	0	56	67	0	0	32	0.91
55184--55598	59	7.0	57	77	9	327	34	29	3	32	1.74
55184--55598	118	3.5	118	82	7	418	34	29	3	32	1.74
55184--55487	29	10.3	29	78	11	253	35	31	2	31	1.70
67089--67560	206	2.3	207	88	3	702	36	21	21	20	1.95
67892--67948	17	3.4	17	90	0	87	43	0	1	54	1.10
67899--67952	23	2.3	24	78	15	60	46	0	1	51	1.11
68563--68587	3	8.3	3	100	0	50	68	0	0	32	0.90
69674--70104	30	14.5	29	81	9	435	34	30	4	30	1.77
69674--70100	61	7.2	57	81	9	453	34	30	4	30	1.77
70021--70181	29	5.5	28	71	12	112	35	29	4	30	1.79
70081--70210	29	4.4	30	70	7	97	34	27	5	32	1.80
72921--72973	20	2.7	20	82	11	56	26	3	1	67	1.17
72927--72995	35	1.9	36	82	8	88	21	2	4	71	1.17
75444--75480	18	2.1	18	90	10	58	64	5	0	29	1.15
89932--90015	43	2.0	43	88	4	125	19	11	15	53	1.72
92314--92373	20	2.8	21	80	17	61	26	23	0	50	1.50
94117--94164	20	2.4	20	71	0	51	22	6	25	45	1.75
95313--95366	21	2.6	21	82	5	65	35	27	9	27	1.87
97947--98150	114	1.8	113	87	6	306	47	6	4	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100216--100414	61	3.2	60	85	5	231	23	12	15	49	1.78
108223--108250	2	14.0	2	100	0	56	50	0	0	50	1.00
108915--108963	25	2.0	25	83	0	62	46	14	24	14	1.81
118032--118064	2	16.5	2	100	0	66	48	0	0	51	1.00
133324--133421	51	1.9	51	89	0	151	28	18	15	37	1.91
135133--135257	66	1.9	66	83	0	160	49	16	12	20	1.78
142310--142345	14	2.6	14	87	12	56	63	0	0	36	0.94
148396--148441	23	2.0	23	100	0	92	34	21	4	39	1.73
155014--155310	163	1.8	163	85	1	416	18	30	19	32	1.95
154906--155342	41	10.7	41	81	2	405	19	28	18	33	1.96
154973--155342	204	1.8	204	83	1	499	18	29	18	32	1.95
156224--156248	13	1.9	13	100	0	50	68	0	8	24	1.16
159547--159627	35	2.3	35	78	16	87	61	8	1	28	1.33
165853--165904	19	2.5	20	78	12	61	7	21	30	40	1.81
165864--165901	19	2.0	19	94	0	67	7	15	28	47	1.74
168493--168532	20	2.0	21	85	5	55	45	0	5	50	1.23
174304--174542	114	2.1	114	82	6	281	35	10	12	42	1.77
174945--175252	115	2.7	111	81	8	289	33	14	16	35	1.90
175631--175668	1	38.0	1	89	0	58	0	0	5	94	0.30
175628--175668	12	3.2	13	93	6	66	0	0	7	92	0.38
175679--175715	1	37.0	1	100	0	74	0	0	0	100	0.00
177967--178013	25	2.0	24	87	8	69	65	0	4	29	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185329--185385	16	3.3	17	73	11	53	56	1	1	40	1.20
185330--185366	19	2.0	18	89	5	56	59	2	2	35	1.26
191163--191221	18	3.6	17	72	14	54	62	1	0	35	1.05
194025--194072	25	1.9	25	91	0	78	14	18	4	62	1.47
194500--194537	18	2.1	18	100	0	76	34	23	10	31	1.89
194443--194743	80	4.0	77	80	13	312	25	16	22	35	1.95
194596--194629	7	4.9	7	100	0	68	41	14	44	0	1.45
194443--194695	80	3.2	80	82	8	342	26	16	25	32	1.96
194610--194743	66	2.0	66	92	2	225	23	15	22	38	1.93
200133--200175	3	14.3	3	85	0	59	60	0	6	32	1.23
202590--202619	16	1.9	15	93	6	51	36	0	0	63	0.95
203550--203574	9	2.8	9	100	0	50	56	0	0	44	0.99
204404--204428	12	2.1	12	100	0	50	40	12	40	8	1.72
210764--210803	21	1.9	21	84	0	53	30	5	2	62	1.29
210800--210846	15	3.1	16	85	14	64	38	0	2	59	1.09
210820--210854	16	2.2	16	89	0	52	51	0	0	48	1.00
210814--210874	24	2.6	24	76	2	61	42	0	3	54	1.17
210848--210885	18	2.1	18	90	9	60	34	0	10	55	1.34
216130--216180	6	8.3	6	91	4	84	68	0	15	15	1.21
216412--216440	6	4.8	6	100	0	58	65	0	0	34	0.93
218940--218970	16	1.9	16	93	0	53	70	0	3	25	1.02
221330--221389	29	2.1	29	93	0	102	28	6	11	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226840--226884	22	2.0	22	91	0	72	37	24	6	31	1.81
233685--233732	14	3.4	14	79	0	60	43	4	14	37	1.65
233665--233731	28	2.4	28	87	2	91	46	5	16	31	1.71
233665--233743	28	2.9	27	83	5	90	45	6	15	32	1.71
233799--234019	28	7.8	28	85	5	248	42	5	17	35	1.72
233807--233989	14	13.0	14	65	13	65	42	5	17	34	1.72
234805--234830	11	2.4	11	100	0	52	88	0	11	0	0.52
237897--238017	50	2.4	52	84	4	156	32	5	7	54	1.52
239828--239871	21	2.0	22	86	4	63	59	2	34	4	1.30
246827--246856	15	1.9	16	93	6	53	0	30	6	63	1.20
248580--248627	25	2.0	25	83	4	62	79	0	14	6	0.92
249136--249171	16	2.2	17	90	5	56	25	5	11	58	1.54
249367--249405	19	2.1	19	85	0	51	74	5	7	12	1.20
256808--256928	57	2.1	57	89	0	179	18	17	21	42	1.89
259237--259325	11	7.7	11	67	9	52	59	2	6	31	1.36
269502--269527	9	2.9	9	100	0	52	34	11	11	42	1.77
269675--269795	57	2.1	57	89	1	179	49	17	0	33	1.47
269743--269781	18	2.3	17	86	8	53	43	10	0	46	1.37
282223--282267	23	2.0	23	91	4	74	24	4	4	66	1.29
284546--284574	15	2.0	15	93	6	51	48	41	3	6	1.47
286335--286373	3	13.3	3	83	5	53	64	2	33	0	1.08
286617--286646	15	2.0	15	93	0	51	56	0	40	3	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299761--299803	20	2.0	21	82	8	52	53	0	0	46	1.00
299826--299874	16	3.2	16	73	26	61	59	8	0	32	1.27
299907--300007	30	3.4	30	71	8	98	35	6	12	44	1.70
301153--301237	43	2.0	43	86	4	118	30	11	10	47	1.74
301807--301986	45	4.0	46	86	2	222	31	27	20	21	1.97
301978--302019	21	2.0	20	95	4	75	19	35	16	28	1.93
302096--302207	37	3.0	37	96	0	206	33	19	5	41	1.74
302434--302476	4	11.0	4	82	5	52	0	32	0	67	0.91
302434--302472	15	2.5	16	91	4	62	0	33	0	66	0.92
302435--302472	8	4.9	8	87	6	60	0	34	0	65	0.93

Tables:   1   2