genome.fa.s14826.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014826.1 Kokia drynarioides strain JFW-HI SEQ_129868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  591985

Tables:   1   2   

This is table  2  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302434--302477	12	3.8	12	84	6	63	0	34	0	65	0.93
303214--303273	33	1.9	33	86	10	90	58	3	31	6	1.40
304366--304404	6	6.5	6	87	0	51	46	0	30	23	1.53
305743--305777	16	2.1	17	89	5	54	71	0	0	28	0.86
308463--308497	16	2.2	16	100	0	70	37	5	5	51	1.50
314747--314786	19	2.2	18	86	4	53	65	2	2	30	1.19
314871--314960	25	3.8	24	67	22	55	56	1	0	42	1.06
314876--314960	24	3.7	23	68	24	61	56	1	0	42	1.07
315011--315063	20	2.6	21	82	5	56	32	3	1	62	1.24
315075--315124	21	2.4	22	76	6	59	36	0	2	62	1.07
315481--315531	22	2.4	21	75	15	50	52	5	0	41	1.25
316174--316234	19	3.2	19	83	9	70	26	4	0	68	1.09
319245--319282	20	1.9	20	84	10	51	31	2	5	60	1.33
324456--324521	29	2.3	29	79	7	73	60	0	1	37	1.06
330171--330203	3	11.0	3	100	0	66	66	0	0	33	0.92
331681--331772	45	2.1	45	97	2	177	41	14	4	40	1.65
331700--331772	25	3.1	25	63	25	68	42	13	4	39	1.64
339548--339589	17	2.4	18	92	4	68	33	4	0	61	1.17
341094--341133	21	1.9	21	94	0	71	20	12	15	52	1.74
345423--345463	20	2.0	20	95	0	73	21	24	21	31	1.98
353241--353288	22	2.2	21	78	10	53	33	0	2	64	1.05
353301--353347	18	2.7	18	83	9	62	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357194--357239	23	2.0	22	84	12	58	45	2	2	50	1.26
379837--379895	31	1.9	31	89	0	91	22	15	13	49	1.79
379852--379911	31	2.0	31	83	3	77	26	13	13	46	1.80
380215--380280	30	2.2	31	94	2	116	48	13	15	22	1.80
390068--390120	17	3.2	17	76	15	65	22	0	5	71	1.06
390068--390144	33	2.4	33	82	10	88	27	0	3	68	1.06
393252--393284	2	17.0	2	93	6	59	0	51	0	48	1.00
397531--397566	17	2.1	17	89	0	54	38	2	0	58	1.13
400679--400721	22	1.9	23	85	4	61	41	2	0	55	1.12
406000--406031	3	10.7	3	93	0	55	0	3	62	34	1.11
411764--411804	3	13.7	3	94	0	55	0	7	34	58	1.26
415397--415517	20	6.1	20	80	0	134	34	32	16	16	1.91
415387--415517	40	3.3	40	92	0	208	34	32	16	17	1.92
418549--418586	17	2.2	17	90	0	58	34	2	5	57	1.35
427364--427436	38	1.9	38	97	0	137	50	10	0	38	1.38
441752--441843	47	2.0	46	91	2	148	29	30	6	33	1.83
442187--442273	42	2.1	42	82	6	106	60	0	17	21	1.35
442717--442820	55	1.9	55	95	0	190	40	8	13	37	1.75
459030--459287	129	2.0	129	92	0	426	29	21	24	24	1.99
462978--463062	17	5.0	17	85	2	118	37	4	1	56	1.28
462979--463063	6	14.8	6	74	10	63	38	4	1	55	1.29
462979--463063	11	7.5	11	73	12	66	38	4	1	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463676--463712	18	2.1	18	90	5	58	48	0	0	51	1.00
463677--463715	21	1.9	21	89	5	62	48	0	0	51	1.00
463699--463783	13	6.8	13	76	6	79	62	2	2	32	1.21
465836--465874	6	6.5	6	87	0	51	46	0	30	23	1.53
474373--474416	18	2.4	18	80	3	52	54	2	38	4	1.33
479057--479510	49	9.3	49	76	9	383	38	19	25	16	1.92
479063--479510	98	4.6	98	89	2	625	38	19	25	16	1.92
479961--480063	17	6.0	17	80	4	118	40	3	1	53	1.30
479962--480066	23	4.6	23	71	12	65	40	3	1	53	1.30
480703--480741	3	13.0	3	100	0	78	66	0	0	33	0.92
480679--480714	17	2.0	19	89	10	58	52	0	0	47	1.00
480704--480800	12	7.6	13	82	4	92	62	2	3	31	1.22
481877--482130	29	8.7	30	71	12	156	32	24	1	41	1.66
481875--482221	58	6.0	58	83	7	395	31	24	3	40	1.72
481883--482216	29	11.5	28	69	17	139	32	23	3	40	1.71
482235--482304	28	2.4	29	86	6	90	30	28	10	31	1.89
489860--489903	19	2.4	18	82	10	54	63	0	0	36	0.95
489860--489917	27	2.1	28	87	3	82	60	0	1	37	1.07
490208--490276	19	3.7	18	73	17	61	44	0	2	52	1.16
490245--490279	9	3.8	9	88	3	52	45	0	0	54	0.99
490311--490369	10	5.9	10	80	9	59	37	5	0	57	1.21
490567--490612	15	3.1	15	73	17	51	23	8	10	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497397--497422	11	2.4	11	100	0	52	53	0	7	38	1.30
500298--500367	30	2.2	33	80	16	87	18	5	11	64	1.45
506405--506470	33	2.0	33	100	0	132	36	9	12	42	1.74
509383--509422	21	1.9	21	89	0	62	22	10	12	55	1.67
516063--516186	41	2.8	47	74	14	134	25	10	29	34	1.89
516784--516847	30	2.3	27	86	8	83	37	9	0	53	1.34
517560--517608	24	2.0	24	88	7	73	57	4	6	32	1.42
522926--523128	59	3.5	58	78	6	180	38	9	23	28	1.85
522978--523121	30	4.9	29	68	22	86	36	7	25	29	1.84
522985--523163	58	3.1	58	79	8	152	36	8	25	30	1.85
523123--523214	47	2.0	46	87	6	132	33	9	26	30	1.88
523169--523323	30	5.2	28	78	9	98	31	4	27	36	1.77
523177--523323	59	2.5	60	81	5	149	32	4	26	36	1.75
523218--523317	29	3.4	29	85	8	139	31	1	28	40	1.63
525242--525304	17	3.7	17	83	6	74	50	4	1	42	1.32
525257--525308	6	8.8	6	77	10	54	51	5	0	42	1.25
531225--531288	22	2.8	23	74	9	60	48	4	0	46	1.23
532414--532459	20	2.2	21	88	3	67	30	2	6	60	1.34
532542--532592	25	2.0	25	81	7	59	47	0	13	39	1.43
533123--533158	19	1.9	19	88	5	56	33	22	8	36	1.84
533254--533293	20	2.0	20	85	9	55	57	0	5	37	1.21
533426--533486	17	3.5	17	72	16	61	59	6	1	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533818--533853	17	2.1	17	90	10	56	38	2	11	47	1.54
541200--541264	31	2.0	33	83	16	84	56	1	1	40	1.18
544881--544925	21	2.1	21	84	8	56	71	17	4	6	1.25
545533--545586	26	2.1	26	100	0	108	24	14	7	53	1.66
548821--548850	6	5.0	6	100	0	60	16	0	0	83	0.65
556048--556075	9	3.1	9	100	0	56	32	14	0	53	1.41
559482--559534	23	2.3	24	81	15	67	67	3	1	26	1.17
559716--559744	15	1.9	15	100	0	58	34	0	20	44	1.52
559768--559818	22	2.3	22	100	0	102	33	0	15	50	1.44
560567--560600	17	2.0	17	88	0	50	44	2	5	47	1.42
566293--566360	33	2.0	34	86	8	95	44	0	1	54	1.09
566310--566410	31	3.2	30	78	13	80	41	0	1	56	1.10
566463--566520	20	2.9	20	84	0	80	37	5	18	37	1.74
567031--567064	17	1.9	18	94	5	61	64	2	2	29	1.22
576836--576908	29	2.5	29	95	0	137	24	21	8	45	1.79
584413--584465	5	11.2	5	76	15	51	75	0	24	0	0.80
586392--586442	25	2.0	25	100	0	102	19	15	27	37	1.92

Tables:   1   2

The End!