Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014829.1 Kokia drynarioides strain JFW-HI SEQ_129871, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  469256

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
341161--341204
3
14.7
3
100
0
88
65
0
34
0
0.93
342264--342301
18
2.2
18
90
4
60
55
5
0
39
1.23
342337--342379
16
2.5
18
85
11
63
44
4
0
51
1.22
354725--354798
29
2.5
28
80
10
76
52
13
2
31
1.54
354740--354820
29
2.7
29
76
16
76
53
12
1
33
1.46
357331--357401
30
2.4
30
83
6
83
53
7
0
39
1.28
357326--357405
29
2.7
30
77
14
78
53
6
0
40
1.26
359062--359100
16
2.4
16
86
4
60
30
0
5
64
1.15
364046--364080
18
1.9
18
94
0
61
25
5
22
45
1.74
364369--364406
20
2.0
20
89
5
60
26
18
0
55
1.43
365719--365758
20
2.0
20
90
0
62
17
7
32
42
1.77
366197--366330
68
2.0
68
95
0
241
37
11
17
32
1.87
367728--367796
27
2.6
27
81
4
77
17
20
31
30
1.95
376836--376860
9
2.8
9
100
0
50
28
0
0
72
0.86
377487--377538
8
6.4
8
76
12
52
80
3
3
11
0.97
377487--377548
25
2.5
25
75
0
70
77
4
6
11
1.11
380559--380626
34
2.0
34
97
0
127
29
22
8
39
1.84
395402--395435
13
2.6
13
90
0
50
8
11
29
50
1.69
400246--400406
66
2.5
65
85
1
214
34
20
9
34
1.86
400250--400406
65
2.4
66
84
1
208
35
21
9
34
1.86
405633--405672
3
13.3
3
100
0
80
32
0
0
67
0.91
405769--405810
16
2.7
15
79
13
50
21
19
11
47
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
405981--406024
22
2.0
23
86
4
63
31
4
6
56
1.46
422634--422819
54
3.4
55
81
8
175
6
48
4
39
1.51
422684--422760
24
3.0
24
69
20
64
2
50
2
44
1.29
424294--424327
15
2.3
15
89
0
50
8
8
47
35
1.66
424876--424917
16
2.5
17
85
11
52
38
0
0
61
0.96
424883--424953
28
2.5
28
77
11
81
33
0
1
64
1.02
428002--428035
14
2.3
15
90
5
52
67
5
0
26
1.13
434848--434893
23
2.0
22
88
12
67
50
0
0
50
1.00
446151--446233
25
3.2
25
68
15
78
21
6
9
62
1.47
446135--446242
53
2.0
53
100
0
216
20
5
12
62
1.49
449248--449284
16
2.3
16
86
13
58
40
0
0
59
0.97
450664--450729
26
2.5
26
97
0
123
22
24
27
25
2.00
456093--456139
16
2.9
16
72
12
51
38
4
2
55
1.31

Tables:   1   2

The End!