genome.fa.s14850.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014850.1 Kokia drynarioides strain JFW-HI SEQ_129893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  775807

Tables:   1   2   

This is table  1  of  2  ( 195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11782--11821	6	6.7	6	97	0	62	5	45	0	50	1.23
22749--23076	30	11.1	30	73	12	218	31	6	28	33	1.83
22749--23076	59	5.6	60	76	7	273	31	6	28	33	1.83
22795--23075	89	3.2	87	80	6	307	32	6	28	32	1.83
24798--24860	11	5.7	11	75	7	65	53	4	0	41	1.22
24798--24845	16	2.9	16	84	6	69	50	6	0	43	1.27
24798--24860	22	2.9	22	80	0	72	53	4	0	41	1.22
32151--32239	31	3.0	29	77	11	90	35	7	13	42	1.73
39015--39071	29	1.9	30	89	3	89	56	0	1	42	1.10
39033--39077	19	2.6	16	83	16	54	55	0	0	44	0.99
42931--43065	20	6.8	20	70	14	73	31	20	27	20	1.97
42931--43069	40	3.5	40	83	0	170	31	20	27	20	1.97
42906--43069	80	2.0	80	85	0	220	34	20	25	20	1.96
42906--43069	40	4.1	40	79	0	166	34	20	25	20	1.96
43355--43487	70	1.9	67	84	4	176	33	11	11	43	1.76
62253--62281	3	9.7	3	100	0	58	34	0	0	65	0.93
68751--68784	16	2.1	17	88	5	52	64	5	2	26	1.30
68913--68971	19	3.2	19	83	13	70	35	0	5	59	1.20
74694--74720	5	5.4	5	100	0	54	0	18	0	81	0.69
81914--81956	20	2.2	20	95	0	77	20	9	18	51	1.74
91387--91438	24	2.2	24	89	0	77	55	5	3	34	1.42
98609--98652	22	2.0	22	86	4	61	52	13	6	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113320--113382	24	2.6	24	84	0	81	25	14	11	49	1.76
133699--133739	21	1.9	22	85	5	57	48	4	0	46	1.23
136989--137047	24	2.5	24	100	0	118	64	0	3	32	1.10
141533--141585	24	2.2	24	87	9	81	67	5	5	20	1.32
141757--141795	14	2.6	15	84	12	53	28	0	2	69	1.02
143300--143419	62	2.0	59	86	4	168	50	3	1	44	1.28
152660--152699	21	2.0	20	85	5	53	7	42	0	50	1.30
153403--153443	21	2.0	21	85	0	55	31	7	19	41	1.79
153529--153573	24	1.9	24	86	4	65	68	0	26	4	1.08
158334--158375	21	2.0	22	90	4	68	21	9	9	59	1.57
162600--162657	26	2.3	24	85	11	73	44	1	0	53	1.10
164304--164362	28	2.1	28	84	9	75	25	5	5	64	1.35
168029--168095	34	2.0	34	93	0	116	46	29	2	20	1.66
178273--178309	7	5.4	7	96	3	67	37	0	13	48	1.43
178678--178726	2	24.5	2	100	0	98	48	0	0	51	1.00
191693--191967	142	1.9	141	87	3	401	36	22	11	29	1.89
194667--194753	27	3.2	27	79	9	97	48	9	10	32	1.69
194679--194765	27	3.3	26	72	8	77	55	9	6	28	1.57
198408--198616	110	1.9	110	89	0	328	36	20	13	29	1.90
201483--201534	26	2.0	26	85	7	70	55	11	9	23	1.64
207601--207640	7	5.7	7	100	0	80	42	30	0	27	1.56
216645--216901	128	2.0	129	84	6	335	34	17	10	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219189--219281	35	2.7	35	100	0	186	27	20	3	48	1.65
220772--220827	29	1.9	29	92	0	94	26	3	16	53	1.59
221397--221448	27	1.9	26	85	14	70	57	1	3	36	1.28
226604--226638	17	2.1	17	88	0	52	48	0	0	51	1.00
227425--227464	20	1.9	22	90	10	66	25	60	5	10	1.49
227425--227477	20	2.5	20	79	11	54	20	64	3	11	1.42
230662--230772	55	2.0	55	98	0	213	40	9	5	44	1.61
235500--235546	22	2.1	22	88	0	67	63	8	2	25	1.34
236642--236689	23	2.1	23	84	3	62	64	12	0	22	1.27
244234--244263	4	7.5	4	100	0	60	50	23	0	26	1.50
248329--248362	16	2.1	16	88	0	50	0	64	0	35	0.94
251033--251067	15	2.2	16	90	5	54	28	0	5	65	1.15
268331--268402	31	2.2	34	80	9	89	58	8	0	33	1.28
269291--269677	132	2.9	132	87	2	546	44	20	14	20	1.86
271802--271869	30	2.2	30	97	2	127	36	17	13	32	1.89
274075--274113	18	2.2	18	90	0	60	23	23	23	30	1.99
281282--281315	17	2.0	17	100	0	68	41	5	11	41	1.66
281413--281441	5	5.8	5	100	0	58	20	37	20	20	1.94
281634--281685	22	2.4	21	87	3	68	9	5	17	67	1.38
281634--281722	21	4.2	22	73	11	78	11	6	16	65	1.45
281705--281831	12	11.1	12	70	9	59	7	4	20	66	1.35
281705--281776	24	3.0	24	73	2	65	6	5	20	66	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281749--281831	35	2.4	34	84	7	107	8	3	19	68	1.30
281805--281844	19	2.0	20	85	4	55	12	0	20	67	1.22
285445--285493	25	2.0	24	88	8	71	61	0	12	26	1.31
286389--286446	28	2.1	28	84	12	75	51	1	6	39	1.39
291982--292007	1	26.0	1	100	0	52	0	0	0	100	0.00
293117--293177	31	2.0	31	83	6	79	42	8	11	37	1.71
293825--293870	19	2.5	19	80	13	51	56	6	0	36	1.25
305122--305153	10	3.3	10	95	4	57	31	0	43	25	1.55
307008--307060	18	2.9	18	71	18	56	43	5	18	32	1.74
308379--308497	12	10.4	12	75	12	81	69	14	5	10	1.34
308395--308527	23	5.9	23	69	10	67	72	13	4	9	1.26
308394--308495	32	3.1	32	73	13	98	71	12	4	10	1.28
308462--308495	11	2.9	12	86	4	52	76	8	2	11	1.12
308499--308547	20	2.5	20	80	3	55	73	18	4	4	1.15
308526--308576	21	2.4	21	90	0	84	64	23	5	5	1.38
320547--320627	39	2.1	39	97	0	153	24	33	9	32	1.88
320547--320651	39	2.7	39	89	2	140	23	32	8	35	1.85
323132--323177	5	9.2	5	97	0	83	82	0	17	0	0.67
326912--326955	22	2.0	22	86	4	63	25	47	0	27	1.52
328371--328395	3	8.3	3	100	0	50	0	0	68	32	0.90
328893--328931	12	3.5	12	80	20	57	48	10	5	35	1.59
328886--328931	21	2.2	21	100	0	92	47	10	4	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331531--331575	6	7.2	6	90	9	72	31	0	17	51	1.46
346236--346394	71	2.2	72	77	4	171	45	15	7	32	1.74
350109--350138	2	15.0	2	100	0	60	50	0	0	50	1.00
354928--354972	24	1.9	23	86	4	63	24	0	2	73	0.95
367416--367491	37	2.1	37	97	0	143	39	13	13	34	1.83
367751--367783	17	1.9	17	88	11	50	15	27	6	51	1.66
368491--368562	36	2.0	36	100	0	144	44	19	2	33	1.65
370135--370165	7	4.6	7	92	8	55	90	0	9	0	0.46
370135--370165	13	2.3	13	94	5	53	90	0	9	0	0.46
371806--371855	18	2.7	18	75	12	57	72	4	0	24	1.02
376943--377035	42	2.2	42	96	0	168	40	13	29	16	1.87
384713--384748	18	2.0	18	88	0	54	30	13	8	47	1.73
395938--395985	25	1.9	25	82	0	60	37	2	4	56	1.30
404370--404476	43	2.5	44	80	7	105	60	4	8	26	1.45
408642--408739	31	3.3	31	71	16	98	23	18	12	45	1.83
408664--408751	27	3.1	27	71	23	81	21	18	9	51	1.73
408642--408751	58	1.9	58	92	0	184	22	18	10	48	1.79
411110--411162	15	3.4	15	86	5	61	37	0	1	60	1.08
416870--416934	34	1.9	34	100	0	130	43	0	16	40	1.49
418398--418429	3	10.3	3	93	6	55	65	0	0	34	0.93
430544--430616	36	2.0	36	89	0	110	26	5	31	36	1.79
431993--432056	29	2.2	29	83	13	78	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432012--432064	20	2.7	19	72	11	54	45	0	1	52	1.11
436967--437045	39	1.9	41	80	14	92	29	2	6	62	1.33
437516--437547	3	10.7	3	100	0	64	68	0	31	0	0.90
441487--441517	2	15.5	2	100	0	62	51	0	0	48	1.00
443662--443927	138	1.9	136	82	6	331	45	18	9	26	1.79
443823--444224	163	2.5	158	85	4	540	44	15	12	28	1.82
447398--447638	81	3.0	79	79	7	259	41	17	15	25	1.89
447649--447832	80	2.3	79	82	6	221	45	19	14	21	1.85
447697--447910	80	2.7	78	81	9	218	44	21	11	21	1.84
455547--456281	154	4.9	149	80	7	733	51	16	13	17	1.76

Tables:   1   2