genome.fa.s14850.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014850.1 Kokia drynarioides strain JFW-HI SEQ_129893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  775807

Tables:   1   2   

This is table  2  of  2  ( 195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455547--456282	301	2.4	294	78	10	770	51	16	13	18	1.76
457697--457724	9	3.1	9	100	0	56	35	0	32	32	1.58
462661--462809	60	2.5	60	90	1	228	32	11	18	38	1.86
470146--470227	29	2.8	29	83	7	94	56	17	0	26	1.41
472076--472115	21	1.9	21	89	0	62	30	2	10	57	1.45
473484--474246	223	3.3	229	80	9	770	29	17	15	37	1.90
478515--478575	29	2.1	29	96	0	113	24	19	22	32	1.97
483297--483356	27	2.2	27	96	0	111	46	10	6	36	1.64
485398--485488	44	2.1	44	100	0	182	38	12	17	31	1.87
502789--502823	17	2.1	17	88	0	52	51	0	0	48	1.00
503228--503266	20	2.0	20	84	0	51	38	0	0	61	0.96
507610--507650	11	3.6	11	83	6	55	39	0	2	58	1.11
509729--509789	32	1.9	32	86	0	86	16	4	13	65	1.42
510433--510460	4	7.0	4	100	0	56	25	0	25	50	1.50
528476--528505	2	15.5	2	93	6	53	50	0	0	50	1.00
535442--535470	14	2.0	15	93	6	51	44	0	6	48	1.29
535546--535574	15	2.0	15	93	6	51	62	6	6	24	1.45
536286--536331	23	1.9	23	82	8	56	69	6	0	23	1.11
541650--541688	16	2.4	16	82	0	51	7	10	35	46	1.67
545460--545513	22	2.5	22	93	0	90	42	16	27	12	1.85
545530--545672	23	6.4	23	73	16	131	44	20	23	11	1.85
545536--545610	39	1.9	39	88	0	114	44	20	22	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560885--560933	6	8.2	6	97	0	62	42	32	8	16	1.77
560885--560933	18	2.7	18	90	0	71	42	32	8	16	1.77
571933--571970	17	2.2	18	95	4	69	36	2	0	60	1.11
573786--574111	30	10.9	29	71	12	207	34	27	3	33	1.76
573796--574111	59	5.3	61	81	8	312	35	27	3	33	1.75
575623--575648	8	3.2	8	100	0	52	84	0	0	15	0.62
582605--582870	132	2.0	129	83	3	327	29	21	21	27	1.98
584909--584949	8	5.1	8	90	0	55	48	9	0	41	1.36
600831--600872	20	2.1	20	82	8	50	59	2	16	21	1.48
601575--601617	16	2.6	17	81	7	52	27	0	4	67	1.10
606848--606882	17	2.1	17	89	5	54	42	0	5	51	1.25
607185--607219	18	1.9	18	88	0	52	45	14	2	37	1.59
622347--622396	25	2.0	24	84	3	64	68	12	2	18	1.30
631819--631863	23	2.0	23	90	0	72	44	4	17	33	1.69
634286--634333	20	2.3	21	82	3	62	41	0	0	58	0.98
643430--643527	33	3.0	33	96	0	187	33	23	9	33	1.86
645853--645904	26	2.0	26	84	0	68	28	13	9	48	1.74
655502--655533	8	4.1	8	92	8	57	37	0	0	62	0.95
655502--655533	15	2.1	15	94	5	55	37	0	0	62	0.95
656487--656529	22	2.0	22	86	9	61	4	44	0	51	1.22
657638--657687	22	2.3	22	82	6	57	6	6	8	80	1.04
657648--657698	22	2.3	20	81	15	57	5	3	7	82	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657768--658247	241	2.0	240	92	2	793	28	10	23	37	1.87
658117--658252	71	1.9	71	93	0	236	35	6	22	36	1.80
662473--662521	23	2.2	21	79	10	53	32	0	0	67	0.91
663912--663980	20	3.4	20	71	2	57	66	2	0	30	1.06
665755--665780	13	2.0	13	100	0	52	46	0	23	30	1.53
683883--683928	24	1.9	24	82	8	58	21	4	0	73	1.00
684329--684367	20	1.9	21	89	5	62	56	0	5	38	1.22
686396--686430	2	17.5	2	93	0	61	48	0	2	48	1.16
696405--696446	14	2.9	14	80	16	50	16	2	0	80	0.81
696817--696872	28	2.0	27	86	3	76	7	17	1	73	1.15
697009--697040	2	16.0	2	100	0	64	0	50	0	50	1.00
699879--699903	13	1.9	13	100	0	50	80	0	0	20	0.72
710522--710556	2	17.5	2	93	0	61	51	0	2	45	1.16
718668--718696	13	2.2	13	100	0	58	13	0	0	86	0.58
718893--718952	29	2.0	30	81	12	70	43	8	0	48	1.33
721663--721729	33	2.0	33	94	0	116	8	4	20	65	1.38
726128--726211	44	1.9	44	95	0	150	30	10	16	41	1.83
732995--733032	19	2.0	19	94	0	67	42	2	0	55	1.14
733168--733230	25	2.6	25	79	2	65	44	3	4	47	1.40
738002--738027	11	2.4	11	100	0	52	7	0	0	92	0.39
740461--740694	105	2.2	105	90	3	362	30	20	11	36	1.89
742122--742486	190	1.9	191	93	1	635	38	22	12	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744132--744170	17	2.3	17	86	8	53	46	23	12	17	1.83
754605--754693	46	1.9	46	93	0	151	28	13	24	33	1.93
754799--754865	29	2.2	29	76	5	71	34	5	14	44	1.70
754807--754864	29	1.9	31	82	6	75	34	3	13	48	1.60
758177--758567	197	2.0	197	84	1	514	27	12	20	39	1.89
770187--770259	23	3.2	23	71	7	76	41	8	8	42	1.64
770197--770269	23	3.2	23	71	7	76	43	6	9	39	1.64
770354--770410	26	2.2	26	90	0	87	42	10	12	35	1.77
772900--773929	209	4.9	209	86	4	1253	29	13	18	38	1.89

Tables:   1   2

The End!