genome.fa.s14852.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014852.1 Kokia drynarioides strain JFW-HI SEQ_129895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  730378

Tables:   1   2   

This is table  2  of  2  ( 195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441107--441148	22	1.9	22	85	9	59	9	11	7	71	1.31
441107--441148	21	2.0	22	86	13	61	9	11	7	71	1.31
443597--443680	41	2.1	39	93	4	141	26	1	27	45	1.61
453594--453619	8	3.2	8	100	0	52	65	0	34	0	0.93
455026--455065	21	1.9	21	84	0	53	25	20	15	40	1.90
456521--456601	30	2.7	30	81	5	92	37	23	4	34	1.77
456538--456764	30	7.6	28	75	12	163	31	22	5	40	1.77
456545--456749	89	2.3	90	79	6	231	31	21	5	41	1.75
456521--456757	89	2.6	88	73	12	223	32	21	5	40	1.76
456547--456765	59	3.7	57	75	15	178	31	21	5	41	1.75
462986--463272	49	5.8	49	75	4	193	34	16	29	19	1.93
462980--463246	99	2.7	99	81	2	277	35	14	29	20	1.92
462978--463286	99	3.1	99	79	2	255	35	15	29	20	1.93
463530--463759	38	6.0	38	82	3	255	27	25	19	27	1.98
463530--463735	76	2.7	76	87	4	281	29	25	16	28	1.97
463783--464130	42	8.4	43	80	7	348	31	25	14	28	1.95
463768--464130	126	2.9	121	81	5	390	32	24	14	28	1.95
464114--464202	47	1.9	46	83	2	115	33	24	16	24	1.96
465983--466202	30	7.4	30	77	11	195	33	20	4	41	1.71
465944--466202	60	4.3	59	76	14	221	33	22	4	39	1.74
465957--466201	90	2.7	90	80	6	257	33	21	4	40	1.73
471441--471481	10	4.2	10	79	17	50	80	0	2	17	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471437--471482	14	3.3	14	82	17	60	78	0	2	19	0.86
484650--484718	33	2.1	33	91	0	111	53	18	4	23	1.62
489720--489832	41	2.8	40	82	2	118	24	15	28	31	1.95
490432--490456	5	5.0	5	100	0	50	20	0	0	80	0.72
502335--502364	15	2.0	15	100	0	60	46	26	6	20	1.75
504958--505005	21	2.5	21	83	12	59	77	0	16	6	0.97
523042--523092	9	5.6	9	76	4	57	80	1	17	0	0.81
523043--523109	17	3.9	16	71	22	55	77	2	19	0	0.89
537571--537605	14	2.4	15	90	4	54	2	20	0	77	0.90
553646--553711	34	1.9	34	84	0	87	25	19	9	45	1.80
554221--554256	14	2.5	15	86	4	56	80	0	19	0	0.71
555495--555567	16	4.5	16	82	3	92	38	8	23	30	1.84
555495--555567	33	2.2	32	85	7	94	38	8	23	30	1.84
555742--555904	56	2.7	61	80	12	185	53	2	0	42	1.18
557637--557672	19	1.9	18	88	5	54	47	13	5	33	1.67
562423--562451	3	9.7	3	100	0	58	34	31	0	34	1.58
569001--569040	21	1.9	21	89	0	62	32	12	20	35	1.90
572451--572489	14	2.7	15	88	11	55	23	10	2	64	1.37
579933--579966	17	2.0	17	100	0	68	35	17	17	29	1.93
581798--581915	57	2.1	57	85	6	159	43	5	22	28	1.76
586450--586476	6	4.5	6	100	0	54	37	29	0	33	1.58
589411--589494	42	2.0	42	97	0	159	42	15	11	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590983--591015	17	1.9	17	100	0	66	51	12	18	18	1.76
592915--592993	39	2.0	39	97	0	149	29	18	29	22	1.98
593662--593768	55	1.9	55	88	0	160	29	19	23	27	1.98
609085--609157	23	3.2	23	64	14	60	41	16	16	26	1.89
609038--609157	46	2.6	46	89	3	172	41	17	14	26	1.87
609725--609758	18	1.9	18	88	5	52	17	26	5	50	1.69
610721--610939	36	6.2	36	83	6	279	28	9	25	36	1.88
610721--610929	67	3.0	70	82	10	277	28	9	25	36	1.87
611330--611746	23	18.1	23	90	0	636	35	4	15	44	1.67
615225--615272	18	2.7	18	90	0	78	50	0	41	8	1.33
650607--650744	69	2.0	69	98	0	267	14	24	21	39	1.90
656128--656184	25	2.4	24	82	8	64	50	14	3	31	1.59
661476--662288	413	2.0	399	91	3	1313	31	12	19	36	1.89
665917--666057	70	2.0	70	100	0	282	51	15	4	28	1.62
670752--670980	53	4.3	53	87	5	302	36	22	14	26	1.93
670784--670980	105	1.9	106	90	3	317	35	21	14	27	1.93
676967--677004	18	2.2	17	86	9	51	42	26	18	13	1.87
682071--682133	32	2.0	32	93	0	108	39	17	9	33	1.82
682181--682276	39	2.5	39	88	6	142	55	14	5	25	1.60
695868--695894	13	2.1	13	100	0	54	33	22	7	37	1.82
698271--698318	18	2.8	17	75	6	51	20	14	8	56	1.64
700701--701045	53	6.6	53	81	5	310	34	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700701--701045	157	2.2	157	83	4	426	34	20	16	28	1.94
700701--701045	104	3.3	104	86	4	421	34	20	16	28	1.94
703302--703392	45	2.0	45	100	0	182	30	19	15	34	1.93
708467--708514	15	3.4	15	73	26	59	56	0	35	8	1.30
708465--708517	27	2.0	27	100	0	106	58	0	33	7	1.26
713321--713406	35	2.5	35	96	1	156	27	18	29	24	1.98
724548--724581	18	1.9	17	88	5	50	20	11	11	55	1.67
726547--726594	24	2.0	25	87	4	71	39	22	10	27	1.87
727128--727420	53	5.6	53	84	4	324	34	21	15	28	1.94

Tables:   1   2

The End!