genome.fa.s14883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014883.1 Kokia drynarioides strain JFW-HI SEQ_129926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  526975

Tables:   1   2   

This is table  1  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3206--3713	254	2.0	254	96	0	926	43	17	14	24	1.87
8568--8611	21	2.1	21	86	0	61	68	6	2	22	1.25
19097--19164	26	2.6	25	84	9	82	27	25	14	32	1.95
20184--20223	17	2.3	18	87	12	57	47	12	22	17	1.81
23489--23582	47	2.0	47	97	0	179	41	12	18	27	1.86
25956--26057	51	2.0	51	90	0	159	33	18	19	28	1.96
27916--27955	16	2.5	16	87	0	62	12	10	42	35	1.76
29191--29270	26	3.1	26	81	0	106	28	21	22	27	1.99
30991--31510	136	3.8	136	87	4	728	45	6	8	39	1.60
49577--49735	83	1.9	82	84	5	212	28	20	11	39	1.88
84549--84602	24	2.2	24	83	6	65	57	0	42	0	0.98
86042--86080	20	2.0	20	100	0	78	35	10	10	43	1.73
91434--91538	37	2.8	37	82	1	120	29	32	16	21	1.95
91480--91584	37	2.8	37	82	2	104	32	28	13	25	1.93
91521--91593	37	2.0	37	94	0	128	30	24	13	31	1.94
92464--92494	16	1.9	16	93	0	53	22	16	0	61	1.34
96047--96104	26	2.3	26	87	3	82	29	20	24	25	1.99
96928--96958	16	1.9	16	93	0	53	22	16	0	61	1.34
98511--98535	8	3.1	8	100	0	50	48	24	0	28	1.52
100487--100524	20	2.0	20	89	5	60	31	7	7	52	1.59
106975--107039	34	1.9	34	81	12	80	52	7	18	21	1.70
106997--107399	201	2.0	201	99	0	797	30	19	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109456--109493	20	1.9	20	84	10	51	71	7	2	18	1.23
125866--125900	10	3.5	10	92	7	54	51	0	0	48	1.00
136508--136548	12	3.3	13	76	13	50	4	26	0	68	1.10
136523--136551	14	2.0	15	93	6	51	3	27	0	68	1.05
145107--145174	21	3.5	21	67	19	65	13	14	33	38	1.85
145087--145269	37	4.9	37	91	0	276	14	19	31	35	1.91
145941--145980	21	1.9	21	89	0	62	42	7	12	37	1.71
145941--145987	21	2.3	21	85	3	60	42	6	10	40	1.65
155873--155954	26	3.2	26	82	0	92	29	20	23	26	1.99
181568--181617	12	4.2	12	84	0	64	64	0	34	2	1.05
190403--190483	40	2.0	41	92	2	137	28	6	27	38	1.80
196589--196618	5	6.0	5	92	0	51	83	0	16	0	0.65
196590--196620	15	2.1	15	100	0	62	87	0	12	0	0.55
208667--208709	18	2.4	18	82	17	54	11	16	0	72	1.13
208670--208707	17	2.2	17	86	9	51	10	18	0	71	1.14
266600--266629	13	2.3	13	94	0	51	73	0	16	10	1.09
273293--273364	31	2.4	29	81	4	81	23	13	15	47	1.81
276819--276861	12	3.2	12	79	20	50	44	2	0	53	1.13
276818--276855	12	2.8	13	84	15	51	47	2	0	50	1.15
279158--279218	27	2.3	27	94	0	104	50	4	11	32	1.60
280717--280896	58	3.1	58	74	9	154	34	6	26	33	1.81
280816--281199	29	13.5	28	75	11	311	34	2	27	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280947--281042	48	2.0	48	89	4	149	32	3	31	33	1.74
280929--281080	78	2.0	77	85	8	211	35	1	27	34	1.68
283033--283109	17	4.9	16	81	13	88	55	5	2	36	1.36
283031--283081	6	8.8	6	75	16	54	52	1	3	41	1.31
283857--283896	16	2.5	15	88	8	53	50	0	0	50	1.00
283850--283897	20	2.3	21	79	13	55	47	0	0	52	1.00
284119--284176	26	2.4	23	81	18	66	62	5	3	29	1.33
285884--286233	139	2.5	139	81	3	436	24	15	10	50	1.74
286311--286353	22	2.0	20	91	8	68	65	2	2	30	1.18
302491--302533	22	2.0	22	85	0	59	30	34	13	20	1.92
302641--302669	12	2.4	12	100	0	58	75	0	6	17	1.01
302785--302829	19	2.4	19	88	0	63	42	20	17	20	1.90
302961--302990	15	2.0	15	93	0	51	36	0	30	33	1.58
305918--305945	3	9.3	3	100	0	56	35	0	0	64	0.94
305936--306064	61	2.1	62	91	1	206	51	3	0	44	1.22
307387--307415	6	4.8	6	100	0	58	51	0	34	13	1.42
307627--307698	29	2.4	29	81	4	81	50	16	15	18	1.79
308659--308722	13	4.9	13	73	7	58	37	10	4	46	1.60
308936--309054	32	3.9	32	75	20	119	23	16	10	48	1.78
308983--309074	32	2.9	32	87	6	98	25	15	9	50	1.74
308936--309126	92	2.1	90	84	3	240	23	15	12	48	1.79
317857--317911	21	2.6	21	79	0	56	20	16	41	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318435--318488	19	2.8	22	74	25	59	27	18	20	33	1.96
321241--321299	21	2.8	21	72	10	57	27	11	25	35	1.91
323125--323263	75	1.9	75	81	6	174	26	16	22	34	1.95
323768--323807	2	20.0	2	100	0	80	50	0	0	50	1.00
324441--324524	42	2.0	42	97	0	159	44	16	14	25	1.85
328167--328207	21	2.0	21	85	0	55	26	19	21	31	1.97
330074--330191	30	4.0	30	88	3	159	42	3	18	35	1.67
330091--330270	60	3.0	58	82	3	198	38	5	20	36	1.75
330091--330255	30	5.6	30	82	4	156	38	4	21	35	1.73
330541--330610	36	1.9	37	91	2	115	31	28	18	21	1.97
351291--351326	12	3.2	12	85	14	51	0	41	0	58	0.98
353112--353150	21	1.9	21	89	5	62	64	7	12	15	1.49
357841--357868	7	4.0	7	100	0	56	14	0	42	42	1.45
362386--362439	21	2.6	21	81	0	63	29	14	24	31	1.95
362393--362461	21	3.3	21	81	6	68	30	15	23	30	1.96
362853--362911	31	1.9	31	100	0	118	33	27	16	22	1.95
363569--363612	20	2.0	23	83	12	58	29	6	0	63	1.20
364228--364270	19	2.3	19	84	11	54	58	2	2	37	1.24
365536--365885	118	2.9	119	90	1	542	26	9	28	35	1.88
371780--371828	26	1.9	26	87	4	73	30	10	10	48	1.70
371803--371875	36	2.0	36	100	0	146	35	16	8	39	1.78
371963--372026	29	2.2	29	81	8	69	18	18	26	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374804--374835	6	5.3	6	100	0	64	15	34	15	34	1.90
374842--374899	24	2.4	25	88	5	77	27	44	18	8	1.79
374838--374913	30	2.5	30	77	12	84	28	42	22	6	1.78
378493--378650	60	2.6	60	83	8	189	36	22	2	37	1.68
378494--378671	30	6.0	30	79	12	161	36	24	2	36	1.70
388005--388271	123	2.2	122	86	4	367	41	17	18	22	1.90
388405--388565	85	1.9	85	83	2	207	40	11	24	24	1.87
388101--388632	209	2.6	206	84	2	654	39	15	21	24	1.92
388447--388839	161	2.4	161	88	1	574	37	16	21	24	1.93
390082--390115	15	2.3	15	89	0	50	44	2	0	52	1.16
401766--401809	23	1.9	23	86	9	63	31	0	2	65	1.05
401771--401860	8	10.5	8	74	20	60	35	1	1	62	1.10
401832--401906	8	8.7	9	72	21	54	30	2	0	66	1.05
401828--401905	18	4.5	16	73	12	66	30	2	0	66	1.05
402388--402425	9	4.3	9	83	6	51	26	0	0	73	0.83
402388--402425	17	2.2	18	90	4	60	26	0	0	73	0.83
403133--403196	33	1.9	33	81	12	78	46	0	23	29	1.52
403503--403580	29	2.6	29	80	11	86	41	7	3	47	1.50
403552--403639	30	2.9	31	74	3	97	37	13	7	40	1.74
403525--403639	61	1.9	60	83	1	149	40	11	6	42	1.65
403515--403642	30	4.3	30	76	4	96	36	14	6	42	1.70
406141--406174	17	2.0	17	88	0	50	35	5	0	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417457--417520	31	2.1	31	100	0	128	35	12	18	32	1.89
418351--418410	26	2.3	26	75	13	70	56	0	6	36	1.26
421509--421545	2	18.5	2	100	0	74	48	0	0	51	1.00
421900--422013	49	2.5	44	80	12	131	44	2	9	42	1.51
423357--423394	19	1.9	19	85	15	51	42	2	5	50	1.39
424665--424730	28	2.3	29	84	5	89	31	3	6	59	1.37
423490--425391	638	3.0	638	92	1	3163	34	11	12	41	1.79
425304--425369	27	2.4	28	82	7	80	36	4	3	56	1.35
430308--430360	27	2.0	28	82	10	67	33	1	1	62	1.17
432392--432483	25	3.7	25	91	0	139	33	28	17	20	1.95

Tables:   1   2