genome.fa.s14883.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014883.1 Kokia drynarioides strain JFW-HI SEQ_129926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  526975

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434603--434946	30	11.6	30	79	5	281	36	3	25	35	1.72
434617--434938	59	5.5	58	74	10	217	37	2	24	35	1.70
434604--434946	89	3.9	89	79	3	343	36	3	24	35	1.72
436141--436206	24	2.8	23	68	22	57	22	10	13	53	1.71
437088--437503	39	10.7	39	69	8	247	25	21	30	21	1.99
437088--437503	78	5.3	78	79	7	325	25	21	30	21	1.99
437094--437347	116	2.2	117	85	2	325	25	22	30	21	1.98
437138--437383	116	2.1	115	81	8	291	26	21	30	20	1.98
437079--437503	194	2.2	194	81	8	465	25	21	30	22	1.99
437205--437504	156	1.9	155	88	3	451	26	21	30	21	1.98
437166--437504	78	4.4	78	82	5	375	25	21	30	21	1.98
449166--449490	30	10.9	29	80	9	309	35	1	26	36	1.65
449193--449468	121	2.3	119	87	5	378	36	1	25	37	1.63
449761--449825	29	2.2	29	94	0	112	58	4	6	30	1.43
449769--449826	29	2.0	29	100	0	116	55	6	6	31	1.53
458148--458204	28	2.0	28	100	0	114	31	14	14	40	1.85
463877--463947	21	3.2	21	79	16	72	42	1	0	56	1.08
463880--463950	9	7.0	9	73	21	52	39	1	0	59	1.06
463892--463947	21	2.6	23	86	8	73	42	1	0	55	1.10
465659--465704	21	2.2	21	92	0	74	21	15	30	32	1.94
465890--466173	139	2.0	139	99	0	559	30	16	16	36	1.91
466303--466373	36	2.0	36	100	0	142	28	8	12	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475762--476103	172	2.0	172	90	2	535	28	18	21	31	1.97
476272--476301	15	2.1	15	93	6	53	20	33	6	40	1.78
514508--514559	17	3.0	17	78	13	52	61	1	36	0	1.07
515871--517042	597	2.0	597	89	0	1808	34	16	18	30	1.94
523626--523664	21	1.9	20	84	5	51	46	15	20	17	1.84
526202--526264	17	3.7	17	84	0	81	42	0	4	52	1.22
526301--526368	15	4.5	15	72	7	66	41	23	14	20	1.89
526302--526370	30	2.3	30	85	5	95	42	21	14	21	1.89

Tables:   1   2

The End!