genome.fa.s14927.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014927.1 Kokia drynarioides strain JFW-HI SEQ_129970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  457488

Tables:   1   2   

This is table  1  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3737--3794	9	6.1	9	75	18	55	65	0	0	34	0.93
3737--3795	30	1.9	31	90	10	95	64	0	0	35	0.94
3747--3803	15	3.8	15	78	21	66	66	0	0	33	0.92
3754--3804	16	3.4	16	77	17	56	68	0	0	31	0.90
4039--4099	32	2.0	32	87	6	90	19	9	0	70	1.15
6717--6778	4	16.2	4	85	9	60	0	32	0	67	0.91
6717--6778	17	3.5	18	82	8	83	0	32	0	67	0.91
9424--9459	18	1.9	19	88	5	56	22	11	25	41	1.86
10553--10583	15	2.0	16	93	6	55	74	0	12	12	1.08
20031--20055	2	12.5	2	100	0	50	0	48	0	52	1.00
21262--21295	16	2.1	16	100	0	68	29	0	29	41	1.57
23751--23786	16	2.1	18	90	10	58	58	8	0	33	1.28
30314--30341	14	2.0	14	100	0	56	57	7	14	21	1.61
37180--37205	2	13.0	2	100	0	52	0	50	0	50	1.00
51772--51805	2	17.0	2	100	0	68	0	50	0	50	1.00
65326--65375	24	2.0	24	84	3	64	28	6	12	54	1.60
65335--65384	24	2.0	24	84	7	64	30	6	12	52	1.62
66749--66783	17	2.1	16	89	5	52	34	8	8	48	1.64
79995--80029	16	2.2	16	89	0	52	60	17	5	17	1.55
89446--89489	22	2.0	23	86	4	63	75	9	0	15	1.05
94331--94421	21	4.3	21	74	0	74	21	49	9	18	1.77
97918--97959	21	2.0	21	86	4	59	30	4	21	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100675--100733	31	1.9	31	82	6	75	45	1	11	40	1.51
102222--102291	29	2.4	30	76	9	74	55	7	8	28	1.56
102668--102720	21	2.6	21	81	3	63	52	1	0	45	1.11
104172--104225	20	2.7	21	80	13	60	59	5	0	35	1.21
104856--104954	23	4.5	23	66	17	68	34	2	2	61	1.19
106549--106611	31	2.0	31	87	6	92	33	7	11	47	1.68
110182--110215	4	8.8	4	93	6	61	26	0	23	50	1.50
112259--112283	2	12.5	2	100	0	50	48	0	0	52	1.00
114071--114196	64	2.0	64	85	0	171	29	30	24	15	1.95
114327--114391	29	2.3	29	86	7	89	46	0	3	50	1.17
117811--117837	2	13.5	2	100	0	54	48	0	0	51	1.00
121273--121339	31	2.2	31	91	0	107	44	7	13	34	1.72
121505--121534	15	2.1	14	93	6	51	43	0	0	56	0.99
128739--128790	16	3.3	15	73	7	50	21	17	13	48	1.81
130635--130682	22	2.2	21	78	10	51	45	2	8	43	1.45
130640--130683	22	2.0	23	86	4	63	50	0	9	40	1.34
131514--131565	11	5.4	9	82	17	61	71	0	5	23	1.07
131950--131983	17	1.9	18	88	5	52	67	2	0	29	1.05
133631--133657	2	13.5	2	100	0	54	48	0	0	51	1.00
136029--136058	4	7.5	4	100	0	60	26	0	23	50	1.50
137489--137515	2	13.5	2	100	0	54	51	0	0	48	1.00
139010--139147	10	13.0	11	67	24	59	60	0	2	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146801--146994	97	2.0	97	86	7	270	38	14	17	28	1.90
147332--147438	29	3.7	28	73	18	94	32	2	26	38	1.71
147340--147438	31	3.3	29	72	15	87	29	3	27	40	1.71
147453--147542	29	3.1	29	80	3	108	38	4	21	35	1.73
147453--147542	30	3.1	29	82	6	103	38	4	21	35	1.73
148567--148650	22	3.8	22	75	9	73	38	3	2	55	1.30
152512--152543	16	1.9	17	93	6	57	50	0	0	50	1.00
156682--157204	261	2.0	261	98	0	1019	36	10	12	39	1.78
163940--163964	6	4.2	6	100	0	50	36	32	16	16	1.90
166422--166523	30	3.5	29	69	20	86	35	11	5	47	1.65
166447--166549	27	3.7	27	71	21	86	37	10	4	46	1.60
166387--166555	58	2.9	58	91	3	250	37	11	5	45	1.64
166492--166621	66	2.0	64	80	7	145	36	11	10	40	1.76
176349--176434	27	3.1	27	70	15	75	39	10	8	41	1.69
176336--176484	57	2.7	55	82	8	178	35	12	8	43	1.73
180255--180280	13	2.0	13	100	0	52	0	7	0	92	0.39
182575--182604	14	2.2	14	94	5	53	20	3	0	76	0.92
184967--185066	38	2.5	40	76	11	116	24	19	27	30	1.98
184992--185070	37	2.1	38	85	2	106	24	18	25	31	1.98
189684--189713	14	2.2	13	94	5	51	76	0	3	20	0.92
190847--190919	34	2.1	35	80	12	80	20	6	4	68	1.30
192008--192033	13	2.0	13	100	0	52	92	0	7	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193761--193830	23	3.0	23	80	2	77	24	15	17	42	1.88
196345--196408	29	2.2	29	82	0	74	48	7	10	32	1.67
196387--196455	29	2.4	29	85	0	93	43	11	14	30	1.81
198322--198389	3	22.7	3	90	0	82	60	1	7	30	1.33
200164--200436	101	2.7	100	81	5	320	30	15	17	36	1.91
200208--200367	51	3.2	51	68	8	128	30	17	16	35	1.93
200148--200476	101	3.3	101	76	9	314	30	17	16	35	1.92
205264--205314	24	2.1	25	82	17	63	1	31	1	64	1.15
225243--225374	39	3.3	39	70	10	113	33	21	17	27	1.96
225209--225331	39	3.0	41	67	11	117	30	26	16	26	1.96
225209--225382	81	2.1	81	91	0	276	32	25	15	25	1.95
225318--225448	64	2.0	64	86	2	183	35	24	17	22	1.95
225237--225527	145	2.0	145	88	1	431	32	24	17	25	1.96
225382--226048	81	8.2	81	84	1	735	33	25	16	25	1.95
229461--229532	36	2.0	36	97	0	135	40	5	31	22	1.77
239247--239798	42	13.6	41	71	11	388	31	26	16	25	1.96
239181--239992	81	10.2	81	83	5	945	32	25	16	26	1.96
239749--239889	70	2.0	70	88	0	210	32	24	17	25	1.97
239842--239998	42	3.9	38	69	15	109	36	22	10	29	1.88
239864--240002	42	3.4	41	71	11	124	34	22	12	30	1.92
239668--239969	151	2.0	151	84	2	401	32	23	16	27	1.96
241025--241065	12	3.4	12	82	0	55	21	2	2	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241374--241581	108	1.9	109	83	1	265	31	11	16	40	1.84
253454--253512	29	2.0	30	86	3	84	33	5	10	50	1.58
254122--254165	16	2.7	16	80	16	54	59	0	2	38	1.10
261776--261806	15	2.1	15	93	0	53	19	3	6	70	1.22
262483--262520	8	4.6	8	93	3	58	57	0	2	39	1.12
265584--265646	23	2.7	23	97	0	117	41	11	22	25	1.86
265698--265782	23	3.7	23	69	17	59	42	15	20	22	1.89
265840--266000	54	3.0	54	82	4	177	40	14	16	27	1.88
265877--266025	54	2.8	54	84	1	201	36	14	18	29	1.91
265995--266136	71	2.0	71	100	0	284	36	15	19	28	1.92
266137--266363	54	4.2	54	82	2	251	40	13	17	27	1.87
266137--266363	108	2.1	107	85	3	294	40	13	17	27	1.87
266943--266994	21	2.5	21	83	0	68	38	26	13	21	1.90
267655--267756	36	2.8	37	85	4	127	20	22	16	40	1.91
274962--275064	36	2.8	36	82	1	116	18	25	18	37	1.93
278588--278613	13	2.0	13	100	0	52	53	0	0	46	1.00
283307--283489	40	4.6	39	83	6	235	17	19	28	34	1.95
283303--283487	78	2.3	78	87	3	255	17	19	28	34	1.94
283820--283867	25	1.9	25	83	8	62	39	0	25	35	1.56
286752--286809	22	2.7	22	89	2	91	43	0	12	44	1.41
287967--287998	16	2.0	16	93	0	55	53	3	18	25	1.59
289470--289509	21	1.9	21	89	0	62	27	15	17	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298370--298410	20	2.0	20	86	9	57	31	12	24	31	1.92
298512--298570	28	2.1	28	100	0	118	30	25	11	32	1.92
301086--301131	11	4.4	11	78	10	51	4	2	21	71	1.14
301091--301132	20	2.1	20	90	0	66	2	2	23	71	1.10
310470--310518	22	2.3	22	86	10	66	61	0	22	16	1.34
337262--337308	17	2.8	16	84	9	58	87	0	10	2	0.63
337279--337308	11	2.9	10	90	9	51	90	0	10	0	0.47
338047--338071	6	4.2	6	100	0	50	36	16	16	32	1.90
338300--338342	21	2.0	21	100	0	86	18	18	18	44	1.87
344360--344407	25	1.9	25	86	0	69	50	12	25	12	1.75

Tables:   1   2