genome.fa.s14933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014933.1 Kokia drynarioides strain JFW-HI SEQ_129976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  464154

Tables:   1   2   

This is table  1  of  2  ( 163 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--75	27	2.4	27	89	0	101	12	3	65	18	1.38
82--132	18	2.8	18	93	0	84	19	5	43	31	1.75
2653--2688	3	12.7	3	88	11	58	36	0	0	63	0.94
20626--20671	24	1.9	24	100	0	92	26	8	30	34	1.86
21528--21575	9	5.3	9	78	9	53	66	2	29	2	1.14
33719--33759	21	2.0	21	85	9	57	36	21	12	29	1.90
48477--48613	27	5.5	26	70	17	94	16	13	28	42	1.85
49733--49771	14	2.8	13	78	14	51	2	35	0	61	1.10
56742--56769	13	2.2	13	100	0	56	57	14	0	28	1.38
58825--58951	63	2.0	62	82	10	152	44	2	1	51	1.23
58901--58955	20	2.8	19	81	13	67	38	1	1	58	1.20
58919--58965	20	2.3	22	78	14	55	36	2	6	55	1.37
63065--63117	14	3.9	14	78	9	56	69	1	1	26	1.09
66636--66722	36	2.4	36	78	0	111	32	9	25	33	1.87
67147--67226	23	3.3	24	74	17	85	38	2	16	42	1.61
67121--67226	49	2.2	49	91	0	167	39	2	15	42	1.61
67128--67206	25	3.2	25	74	16	83	40	1	15	43	1.54
75227--75336	52	2.1	53	89	1	168	39	4	17	39	1.70
75258--75290	10	3.4	10	95	4	59	42	0	21	36	1.53
77363--77418	23	2.4	23	100	0	112	8	16	12	62	1.53
77363--77418	11	4.9	11	78	22	62	8	16	12	62	1.53
84506--84623	37	3.2	37	87	4	166	10	19	33	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85441--85821	28	13.6	28	79	6	378	33	18	3	44	1.67
85455--85813	197	1.8	194	84	3	495	33	17	3	45	1.66
93819--94047	29	7.9	30	76	15	196	33	6	27	32	1.83
93835--94049	58	3.7	58	84	3	272	33	6	25	33	1.83
93818--94047	87	2.6	86	80	12	229	33	7	26	32	1.84
94021--94102	30	2.7	31	76	16	82	32	2	28	36	1.70
95861--95965	6	17.8	6	74	11	83	52	3	0	42	1.26
95886--95965	23	3.4	23	73	13	74	52	5	0	42	1.23
95868--95965	29	3.3	29	78	7	108	54	4	1	40	1.26
96333--96950	209	3.0	208	88	1	887	22	22	18	36	1.95
96745--97113	172	2.1	172	90	0	576	22	22	17	37	1.94
97092--97196	37	2.8	37	91	0	165	26	23	16	33	1.96
101021--101110	37	2.4	37	86	0	126	12	20	27	40	1.88
112070--112121	21	2.5	21	100	0	104	57	0	21	21	1.41
112777--112821	21	2.0	23	87	8	67	37	13	17	31	1.89
125552--125578	2	13.5	2	100	0	54	48	0	0	51	1.00
125633--125679	22	2.1	21	84	7	58	51	2	2	44	1.25
129686--129729	14	3.2	14	83	6	54	36	0	9	54	1.32
129902--129986	40	2.1	40	95	0	152	31	18	21	28	1.97
130014--130051	15	2.5	15	87	8	51	18	2	2	76	1.02
135951--135975	8	3.1	8	100	0	50	52	0	0	48	1.00
146172--146200	6	4.8	6	100	0	58	31	0	34	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154467--154511	22	2.1	22	84	8	58	22	26	0	51	1.49
159385--159575	97	2.0	97	95	0	346	41	21	12	24	1.87
166309--166343	13	2.8	12	87	12	52	45	0	14	40	1.45
166306--166344	13	2.9	13	84	3	51	43	0	15	41	1.46
166743--166814	36	2.0	36	86	10	103	41	12	5	40	1.66
170632--170682	15	3.3	15	74	17	50	33	0	0	66	0.92
171706--171797	10	9.3	10	75	12	57	34	7	0	57	1.27
171705--171770	29	2.2	31	78	13	75	33	7	0	59	1.26
171706--171769	30	2.2	30	83	8	78	34	7	0	57	1.27
171726--171802	40	1.9	41	91	2	129	33	9	0	57	1.30
171747--171808	21	3.0	21	67	21	51	32	8	0	59	1.26
176295--176337	19	2.2	20	87	4	61	62	4	6	25	1.40
180069--180121	24	2.2	24	100	0	106	43	9	20	26	1.82
180344--180377	3	11.3	3	100	0	68	35	0	32	32	1.58
188395--188442	25	2.0	24	95	4	87	37	0	2	60	1.09
194449--194574	45	2.8	45	84	5	166	35	19	24	20	1.95
205297--205322	6	4.3	6	100	0	52	46	0	34	19	1.50
206435--206841	200	2.0	200	86	0	571	29	20	21	28	1.98
215668--215724	26	2.1	27	83	3	71	61	12	0	26	1.31
223889--223956	27	2.5	26	77	11	66	25	4	1	69	1.16
223886--223963	22	3.4	22	77	13	70	26	3	1	67	1.15
227786--227842	28	2.2	27	82	14	68	47	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229143--229179	18	2.0	19	89	5	58	0	27	0	72	0.84
236751--236779	15	2.0	15	93	6	51	27	17	6	48	1.72
241896--242705	402	2.0	402	95	0	1467	24	22	18	33	1.97
247341--247384	21	2.1	21	83	8	54	27	4	4	63	1.33
255273--255331	29	2.0	30	93	3	102	32	6	15	45	1.72
258895--258935	16	2.8	16	85	10	52	24	0	43	31	1.54
259384--259439	28	2.0	28	86	6	78	53	0	7	39	1.28
267201--267472	135	2.0	135	94	0	472	40	8	8	42	1.66
268593--268636	17	2.8	16	76	10	54	18	2	4	75	1.09
270913--270937	6	4.2	6	100	0	50	80	0	0	20	0.72
275512--275566	23	2.5	22	79	5	65	60	3	1	34	1.25
279196--279654	225	2.0	225	84	1	598	37	14	17	30	1.90
295175--295239	30	2.2	30	85	0	85	52	9	0	38	1.34
295513--295594	29	2.8	27	73	15	65	52	10	1	35	1.45
295513--295592	31	2.7	29	79	13	90	53	11	1	33	1.44
295847--295884	15	2.6	15	91	4	60	15	0	2	81	0.80
302374--302429	17	3.1	18	76	21	55	33	3	1	60	1.24
302743--302930	91	2.0	94	90	6	301	29	18	10	42	1.83
312850--312878	12	2.4	12	100	0	58	58	0	41	0	0.98
313635--313659	7	3.6	7	100	0	50	88	12	0	0	0.53
313921--313977	27	2.1	27	93	0	96	35	15	21	28	1.94
319978--320031	22	2.4	22	85	14	67	57	9	1	31	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320335--320381	21	2.2	21	88	0	76	53	12	6	27	1.63
336194--336254	31	2.0	31	90	0	95	31	11	9	47	1.72
342393--342440	20	2.4	19	80	13	51	12	14	14	58	1.64
344550--344575	7	3.7	7	100	0	52	84	0	0	15	0.62
344559--344642	28	3.0	28	82	6	100	64	1	3	30	1.18
344845--344921	10	7.8	10	72	13	52	33	1	3	61	1.23
344968--345012	9	5.0	9	84	10	56	20	0	2	77	0.87
350132--350157	10	2.6	10	100	0	52	15	0	0	84	0.62
354514--354551	16	2.3	17	90	4	60	65	2	2	28	1.19
356155--356217	26	2.2	28	83	10	76	60	3	0	36	1.13
357283--357332	25	2.0	25	84	4	64	54	24	0	22	1.45
357297--357346	25	1.9	27	88	8	77	58	22	0	20	1.40
357625--357711	45	1.9	46	88	2	131	36	10	8	44	1.68
359639--359932	59	5.1	58	83	5	326	29	3	31	35	1.73
359639--359932	29	10.1	29	77	12	237	29	3	31	35	1.73
359639--359932	28	10.1	27	75	13	221	29	3	31	35	1.73
361569--361657	6	15.3	6	70	18	55	49	2	2	46	1.26
361576--361658	17	4.9	17	82	5	105	49	2	2	45	1.28
361576--361658	34	2.4	34	89	0	121	49	2	2	45	1.28
362139--362754	205	3.0	205	93	0	1027	20	20	21	37	1.95
362149--362754	204	3.0	205	92	1	1011	20	20	21	37	1.94
367440--367507	28	2.3	29	82	5	75	36	7	1	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367453--367511	17	3.3	17	88	7	73	38	5	0	55	1.22
368220--368281	21	3.0	21	74	9	63	56	6	1	35	1.35
368220--368301	18	4.4	18	76	3	74	57	6	1	35	1.31
368220--368285	3	22.0	3	76	6	53	57	6	1	34	1.33
369224--369512	30	9.8	29	77	8	244	37	26	2	33	1.70
369220--369297	28	2.6	30	84	6	97	39	24	1	34	1.64
369225--369603	118	3.2	118	82	5	403	35	26	3	34	1.74
369225--369660	59	7.4	59	78	8	349	34	26	4	35	1.76
369290--369721	59	7.3	60	79	7	288	33	26	4	35	1.77
369558--369711	29	5.2	29	68	14	100	31	26	6	35	1.82

Tables:   1   2