genome.fa.s14933.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014933.1 Kokia drynarioides strain JFW-HI SEQ_129976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  464154

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369584--369687	30	3.5	30	72	15	90	30	23	6	39	1.80
372677--372735	29	2.0	30	86	3	84	50	13	5	30	1.63
372943--372989	22	2.1	22	84	0	58	53	2	0	44	1.12
382464--382600	55	2.5	55	82	0	130	27	20	20	31	1.97
382510--382699	99	1.9	99	82	4	240	25	20	21	32	1.97
382465--382754	154	1.9	154	84	2	386	24	20	22	32	1.97
382609--382853	55	4.4	55	88	4	332	24	19	23	33	1.97
382609--382884	111	2.5	111	83	5	310	23	19	23	32	1.97
385377--385459	30	2.7	31	85	5	107	34	7	13	44	1.71
393513--393591	37	2.2	36	88	2	113	21	24	22	31	1.98
395717--395775	17	3.5	17	78	0	64	18	15	13	52	1.74
395719--395769	23	2.2	23	79	6	59	19	15	13	50	1.77
396794--396868	37	2.0	37	89	0	114	28	24	18	29	1.98
396892--396979	38	2.3	38	81	9	101	31	22	11	34	1.90
396971--397022	26	2.0	26	88	0	77	28	21	23	26	1.99
397646--397676	16	1.9	16	93	0	53	25	12	0	61	1.32
404720--404762	23	1.9	23	85	4	61	44	11	9	34	1.73
404937--405012	30	2.5	30	85	4	91	51	6	3	38	1.47
421282--421377	3	33.7	3	80	14	87	67	4	2	26	1.19
421706--421771	27	2.4	27	85	9	98	33	10	45	10	1.73
423155--423246	3	32.0	3	82	12	104	26	2	1	70	1.05
423135--423251	51	2.3	51	81	11	127	26	3	0	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429092--429132	17	2.6	16	88	7	57	19	4	0	75	0.98
431274--431319	22	2.1	22	83	0	56	60	19	10	8	1.55
431517--431603	3	28.7	3	76	19	58	70	2	3	24	1.15
431523--431597	28	2.6	27	80	17	89	70	2	4	22	1.16
431550--431631	37	2.2	37	85	12	114	73	1	4	20	1.09
431523--431643	31	4.2	27	70	17	75	71	3	4	20	1.16
431564--431634	9	7.9	8	73	17	52	76	1	4	18	1.03
431578--431646	5	13.0	5	77	17	52	73	2	2	20	1.09
431578--431645	12	5.8	11	72	19	50	75	2	2	19	1.07
431615--431646	17	1.9	16	93	6	55	78	3	0	18	0.89
431520--431640	64	1.9	64	82	12	153	71	3	4	20	1.16
432187--432356	75	2.3	73	80	6	191	27	25	20	26	1.99
432481--432721	118	2.1	117	92	2	394	44	14	9	30	1.78
436026--436225	106	1.9	106	82	6	251	36	14	12	37	1.83
446403--446528	39	3.2	39	70	11	103	35	26	11	26	1.90
446370--447032	81	8.2	80	74	8	411	35	25	11	27	1.90
446734--447032	42	7.3	43	67	18	156	37	26	10	26	1.88
446370--447032	243	2.7	241	75	7	619	35	25	11	27	1.90
448440--448507	26	2.6	26	83	4	75	32	17	17	32	1.94
456365--456579	108	2.0	109	82	6	267	43	13	8	33	1.75
459894--460027	70	2.0	69	85	4	182	44	8	11	35	1.71

Tables:   1   2

The End!