genome.fa.s14946.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014946.1 Kokia drynarioides strain JFW-HI SEQ_129989, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200457

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7040--7142	31	3.4	31	71	15	88	34	8	13	42	1.75
27884--27909	6	4.3	6	100	0	52	0	0	34	65	0.93
28129--28182	19	2.5	23	74	22	62	57	1	0	40	1.09
28104--28183	42	1.9	41	82	5	97	61	3	0	35	1.14
45568--45607	20	2.0	20	85	9	55	47	2	2	47	1.29
46667--46732	6	11.0	6	100	0	132	33	50	16	0	1.46
49443--49485	5	8.6	5	89	0	68	0	25	0	74	0.82
54628--54720	17	5.9	17	77	17	112	24	4	2	68	1.18
54628--54720	47	2.0	47	100	0	186	24	4	2	68	1.18
54658--54725	30	2.3	30	94	2	120	23	4	2	69	1.21
61715--61780	28	2.4	28	82	5	80	43	3	13	39	1.60
65418--65483	36	1.9	35	81	9	82	54	3	6	36	1.41
65885--65945	30	2.0	30	87	0	86	44	1	36	18	1.59
66622--66700	17	4.6	17	73	6	61	40	1	3	54	1.26
66635--66700	34	2.0	33	84	3	87	42	1	4	51	1.31
66715--66755	20	2.1	19	86	13	57	53	17	4	24	1.63
67639--67897	59	4.4	59	79	6	260	33	27	3	35	1.74
67639--67897	29	8.9	29	79	5	254	33	27	3	35	1.74
69670--69698	12	2.3	13	94	5	51	41	0	6	51	1.28
76853--76909	27	2.2	26	84	9	73	21	8	15	54	1.68
82488--82520	17	1.9	17	93	0	57	39	9	6	45	1.61
88178--88349	86	2.0	86	95	0	308	32	19	9	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99434--99506	34	2.2	33	85	2	92	65	23	4	6	1.34
99467--99543	22	3.5	22	80	8	93	67	23	5	3	1.28
102388--102412	5	5.0	5	100	0	50	80	0	20	0	0.72
104234--104258	13	1.9	13	100	0	50	92	8	0	0	0.40
104355--104387	4	8.2	4	100	0	66	48	27	0	24	1.51
106232--106267	18	1.9	19	88	5	56	58	2	8	30	1.42
109987--110042	28	1.9	30	85	7	80	35	1	16	46	1.57
111353--111823	235	2.0	234	98	0	906	32	11	21	33	1.90
113846--113885	19	2.1	19	85	4	53	60	0	37	2	1.11
114005--114079	28	2.7	27	78	17	82	28	0	8	64	1.22
114118--114191	29	2.5	30	80	10	80	27	1	1	70	1.04
114139--114195	29	2.0	29	86	10	82	29	1	0	68	1.00
114548--114596	25	2.0	25	91	0	80	8	28	20	42	1.80
114607--114644	20	1.9	19	89	5	58	5	10	15	68	1.36
114613--114657	19	2.3	20	84	3	56	4	15	15	64	1.44
117655--117723	6	11.5	6	87	0	84	46	0	30	23	1.53
117652--117723	30	2.4	30	100	0	144	47	0	29	23	1.52
117651--117723	24	3.0	24	87	0	101	47	0	28	23	1.52
123036--123098	22	2.8	23	76	16	69	20	14	31	33	1.92
123036--123103	21	3.1	21	80	16	77	19	13	30	36	1.90
124600--124679	41	2.0	41	85	2	108	21	27	20	31	1.98
130790--130824	14	2.4	15	85	9	54	82	5	0	11	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131609--131762	77	2.0	77	88	0	227	36	25	7	31	1.83
131929--131972	22	2.0	22	100	0	88	40	9	9	40	1.68
132509--132539	13	2.3	14	94	5	55	9	6	0	83	0.79
133710--133747	17	2.3	17	86	4	51	65	5	0	28	1.14
133705--133747	17	2.6	16	81	3	50	60	4	0	34	1.17
143008--143429	210	2.0	207	85	6	564	34	10	19	34	1.87
144544--144598	29	1.9	28	85	3	74	58	1	0	40	1.09
144535--144617	39	2.1	39	82	4	96	60	2	2	34	1.23
144555--144625	20	3.7	19	73	16	65	63	1	1	33	1.12
144544--144656	39	2.9	38	83	9	113	61	0	3	33	1.19
147532--147614	31	2.7	31	92	0	139	40	18	9	31	1.82
147780--147911	59	2.2	59	87	5	185	30	14	12	42	1.83
147780--147929	59	2.5	58	84	8	176	34	14	12	38	1.84
147946--148133	58	3.2	60	77	3	173	33	12	23	30	1.92
152408--152557	75	2.0	75	100	0	300	41	9	12	37	1.74
152940--153687	270	2.8	270	90	2	1162	38	18	18	23	1.93
158433--158540	54	2.0	54	98	0	207	46	12	22	19	1.82
167699--167742	21	2.1	21	83	8	54	65	0	0	34	0.93
167890--167933	19	2.5	19	82	14	58	20	4	4	70	1.23
184572--184597	12	2.2	12	100	0	52	50	0	0	50	1.00
186967--187032	4	16.2	4	80	9	71	0	33	0	66	0.92
186967--187028	13	4.6	15	78	17	66	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186966--187032	25	2.7	24	77	11	73	0	34	0	65	0.93
196533--196590	30	1.9	31	83	13	77	44	8	3	43	1.51
197049--197080	9	3.4	10	87	12	50	25	0	9	65	1.22
198482--198547	2	33.5	2	77	8	55	43	3	0	53	1.16

Tables:   1

The End!