genome.fa.s14963.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014963.1 Kokia drynarioides strain JFW-HI SEQ_130007, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  411358

Tables:   1   2   

This is table  2  of  2  ( 189 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304625--304706	18	4.3	19	73	13	69	37	0	1	60	1.04
304624--304706	29	2.9	29	76	8	89	37	0	1	61	1.04
304813--304868	24	2.3	24	87	0	85	35	10	10	42	1.74
304855--304910	27	2.1	26	83	9	69	35	8	3	51	1.51
304865--304919	27	2.0	28	82	10	69	32	9	5	52	1.56
304865--304918	26	2.0	28	82	7	67	33	9	5	51	1.57
309167--309247	40	2.0	40	87	0	117	29	11	22	37	1.89
313168--313306	66	2.1	68	89	5	212	18	13	26	41	1.88
313493--313567	23	3.3	23	92	0	123	34	0	17	48	1.48
314667--314709	21	2.0	21	81	0	50	51	2	6	39	1.42
316347--316457	17	6.5	17	73	10	91	40	0	6	52	1.33
316394--316459	34	2.0	33	93	3	114	43	0	6	50	1.27
317163--317223	3	20.0	3	93	3	104	63	0	1	34	1.04
318397--318861	59	7.9	59	81	8	434	33	23	4	39	1.73
318840--318918	28	2.8	29	75	5	72	24	29	15	31	1.95
330699--330757	23	2.6	23	75	0	55	18	10	1	69	1.25
330834--330918	29	2.9	29	75	10	73	24	11	0	63	1.28
330852--330928	29	2.7	27	76	9	73	27	11	0	61	1.31
333615--333664	25	2.0	26	92	4	84	42	22	14	22	1.88
333620--333701	24	3.4	23	80	8	83	32	24	17	25	1.96
334997--335413	59	7.0	59	82	6	409	33	2	28	35	1.72
335066--335413	29	11.8	29	77	11	289	33	2	27	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335066--335417	30	11.9	28	74	13	271	33	2	28	35	1.70
336358--336401	19	2.4	19	81	14	56	36	0	0	63	0.95
346846--346891	11	4.2	11	81	10	58	80	0	15	4	0.86
347793--347880	17	5.3	16	76	13	81	79	0	19	1	0.79
347792--347881	7	13.8	6	81	16	76	78	0	20	1	0.81
348228--348304	37	2.1	37	85	0	100	31	25	11	31	1.92
348242--348313	37	1.9	37	83	5	92	26	27	13	31	1.94
352557--352639	37	2.2	37	82	0	103	27	28	13	30	1.94
355053--355493	42	10.9	42	81	6	450	31	28	17	22	1.97
355058--355444	121	3.2	122	85	7	513	30	29	17	21	1.97
355057--355493	82	5.4	82	82	7	486	31	28	17	22	1.97
355055--355493	163	2.7	156	80	11	469	31	28	17	22	1.97
355508--355690	47	4.0	46	85	2	262	33	25	16	25	1.96
355508--355690	93	2.0	90	89	3	276	33	25	16	25	1.96
356605--356630	4	6.5	4	100	0	52	23	0	0	76	0.78
358020--358223	108	1.9	109	89	5	324	31	8	16	42	1.79
359996--360082	28	3.2	28	64	18	76	33	8	8	50	1.61
359977--360080	52	2.0	52	96	0	190	30	6	8	53	1.57
360673--360711	20	2.0	20	94	0	69	33	15	25	25	1.95
363184--363248	23	2.9	22	79	4	76	43	3	3	50	1.33
363964--364010	26	1.9	26	83	12	64	14	10	8	65	1.45
367947--367980	15	2.3	15	100	0	68	11	5	29	52	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382752--382793	21	2.0	22	90	4	68	33	35	4	26	1.77
383897--383921	8	3.1	8	100	0	50	36	0	0	64	0.94
386614--386666	23	2.4	22	78	12	56	35	43	9	11	1.73
388855--388923	16	4.3	16	78	5	77	43	0	2	53	1.15
397574--397626	27	2.0	27	88	0	79	24	37	16	20	1.93
399535--399599	12	5.6	11	74	25	55	35	3	0	61	1.12
400420--400461	18	2.3	18	91	0	66	42	0	0	57	0.99
400431--400465	8	4.1	8	86	13	52	37	0	0	62	0.95
400836--402088	277	4.4	277	80	8	1289	39	7	20	32	1.80
400841--402097	183	6.7	183	77	10	984	39	7	20	32	1.80
400841--401530	94	7.5	92	82	6	738	39	6	20	33	1.79
401407--401645	116	2.1	115	92	0	406	42	6	19	31	1.76
401507--401548	22	2.0	22	85	4	59	52	4	19	23	1.65
401313--401736	210	2.0	206	86	3	591	41	6	19	32	1.77
401529--402097	94	6.1	94	85	3	767	39	7	21	31	1.82
401529--402097	184	3.1	185	91	1	870	39	7	21	31	1.82
402041--402155	60	1.9	58	85	3	158	44	6	28	20	1.77
402146--402277	70	1.9	70	87	4	194	40	6	21	31	1.77
402263--402376	60	1.9	60	90	3	185	46	8	23	21	1.79
401995--402435	225	2.0	223	88	3	663	42	7	22	27	1.80
402652--402720	34	2.0	34	97	0	129	46	4	13	36	1.62
402686--403044	94	3.8	95	85	5	471	37	6	24	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406276--406318	19	2.4	18	92	7	70	16	11	11	60	1.59
406909--406964	19	2.9	18	82	17	69	75	0	23	1	0.90
406909--406954	23	2.0	24	87	12	69	73	0	23	2	0.94

Tables:   1   2

The End!