genome.fa.s14964.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014964.1 Kokia drynarioides strain JFW-HI SEQ_130008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148390

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625--1750	47	2.7	47	80	4	148	23	14	17	45	1.85
2880--2913	11	3.1	11	91	8	52	32	0	0	67	0.91
3026--3090	30	2.2	30	94	0	112	56	15	3	24	1.53
3161--3206	24	1.9	24	86	0	65	71	10	6	10	1.30
4744--4899	77	2.0	77	100	0	312	43	11	12	32	1.79
8544--8588	23	1.9	24	86	4	65	46	8	0	44	1.34
10795--10848	25	2.2	24	87	6	81	59	3	3	33	1.33
13182--13321	70	2.0	70	97	0	262	38	11	15	34	1.84
14239--14272	5	6.8	5	96	0	50	61	5	20	11	1.50
23118--23169	27	2.0	27	88	3	79	59	1	7	30	1.36
24421--24460	19	2.1	19	86	9	55	10	20	7	62	1.50
24570--24606	18	2.1	18	94	0	65	21	13	43	21	1.87
32339--32378	19	2.2	18	86	4	53	12	0	15	72	1.12
32505--32560	24	2.3	24	81	0	67	37	12	17	32	1.88
32563--32636	23	3.2	23	90	0	112	39	20	21	18	1.93
39325--39353	5	5.8	5	100	0	58	82	0	17	0	0.66
39912--39949	18	2.1	18	90	0	58	47	5	10	36	1.61
39882--39938	24	2.4	24	77	14	64	38	10	10	40	1.74
40091--40205	58	2.0	58	84	0	149	49	11	0	39	1.39
42832--42857	11	2.4	11	100	0	52	76	0	23	0	0.78
47197--47251	28	2.0	28	82	7	67	29	5	9	56	1.53
47688--47746	20	2.9	20	82	7	57	44	0	6	49	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48272--48313	17	2.4	18	80	15	52	40	4	7	47	1.52
49850--50082	117	2.0	117	98	0	448	38	14	18	28	1.90
50885--50980	38	2.5	38	100	0	192	39	16	5	38	1.71
51261--51311	21	2.4	21	80	0	57	29	1	11	56	1.46
51627--51671	23	2.0	22	87	12	65	71	0	0	28	0.87
51633--51679	24	2.0	24	87	8	69	70	0	0	29	0.88
53941--53965	13	1.9	13	100	0	50	40	0	0	60	0.97
55514--55576	25	2.5	26	89	2	92	22	20	28	28	1.98
55514--55608	26	3.7	26	78	4	95	24	17	25	32	1.97
58838--58966	30	4.3	31	75	10	124	43	2	3	50	1.33
58838--58966	60	2.1	61	94	1	224	43	2	3	50	1.33
58950--58991	21	2.1	20	82	8	50	38	4	7	50	1.51
68575--68613	19	2.1	19	100	0	78	41	10	17	30	1.83
74782--74834	27	2.0	27	92	3	90	41	16	18	22	1.90
75708--75749	18	2.4	17	84	11	57	30	9	35	23	1.87
80950--80998	20	2.5	20	83	10	64	26	6	4	63	1.36
90471--90545	31	2.6	29	82	14	91	26	2	18	52	1.59
90472--90545	32	2.4	31	81	14	91	27	2	18	51	1.60
90505--90582	32	2.5	32	83	6	90	33	2	17	46	1.62
95069--95196	30	4.3	30	85	4	168	32	6	23	37	1.80
95094--95226	60	2.2	60	82	2	160	35	7	21	35	1.82
96390--96574	40	4.7	39	75	9	171	24	16	25	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96391--96582	79	2.4	79	87	2	271	24	17	24	33	1.96
108262--108395	30	4.5	29	78	8	128	34	4	20	41	1.72
108289--108412	30	4.1	30	82	0	140	34	4	23	37	1.74
110314--110358	2	22.5	2	90	0	72	48	46	2	2	1.26
110941--111011	34	2.1	34	84	5	90	54	4	18	22	1.60
133893--133937	21	2.3	19	84	7	63	15	20	2	62	1.43
135571--135610	2	20.0	2	100	0	80	50	0	0	50	1.00
145312--145342	15	2.1	15	100	0	62	48	32	0	19	1.49

Tables:   1

The End!