genome.fa.s14990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014990.1 Kokia drynarioides strain JFW-HI SEQ_130034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  743029

Tables:   1   2   3   

This is table  1  of  3  ( 257 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315--1350	18	2.0	18	88	0	54	44	0	0	55	0.99
6245--6285	21	2.0	21	90	0	64	17	9	4	68	1.35
8044--8084	21	2.0	21	85	0	55	24	14	9	51	1.72
16210--16275	31	2.2	29	80	15	80	22	13	7	56	1.63
19343--19385	20	2.2	19	83	4	50	65	0	0	34	0.93
27753--27787	2	17.5	2	100	0	70	0	51	0	48	1.00
29462--29493	16	2.0	16	93	0	55	18	28	0	53	1.45
36155--36179	2	12.5	2	100	0	50	48	0	0	52	1.00
42623--42658	19	1.9	18	88	5	54	44	0	0	55	0.99
45356--45430	24	3.1	24	90	0	114	56	9	12	22	1.64
53926--53968	9	4.7	9	82	5	59	20	44	2	32	1.65
58051--58144	39	2.4	39	85	0	125	37	6	5	51	1.50
59090--59166	27	2.8	27	78	7	84	64	3	0	31	1.11
59279--59330	20	2.6	21	87	6	72	69	25	0	5	1.10
59292--59371	12	7.1	11	76	12	65	71	21	2	5	1.17
59292--59358	32	2.1	32	86	5	91	71	22	1	4	1.12
59379--59427	12	4.3	12	72	15	50	67	24	6	2	1.24
59292--59421	56	2.4	54	78	8	129	67	23	5	3	1.28
59334--59437	33	3.2	33	83	8	115	67	21	7	3	1.32
61803--61852	24	2.1	23	92	3	82	54	16	8	22	1.68
63310--63362	13	4.1	13	82	0	61	37	22	5	33	1.78
72897--72966	20	3.5	20	96	0	122	25	37	11	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73177--73231	20	2.7	21	80	8	60	36	21	10	30	1.88
76244--76292	20	2.4	21	83	10	66	28	24	12	34	1.91
83249--83282	6	5.7	6	100	0	68	17	0	47	35	1.48
89331--89401	31	2.4	30	84	11	92	45	12	5	36	1.66
90287--90318	17	2.0	17	88	11	50	6	12	12	68	1.37
122180--122217	17	2.2	18	85	4	51	42	0	0	57	0.98
122669--122712	23	1.9	23	86	9	63	29	13	6	50	1.68
131638--131716	23	3.5	22	84	10	97	39	25	22	12	1.89
131705--131781	23	3.3	23	83	7	86	38	20	27	12	1.89
131844--131891	24	1.9	26	84	16	66	31	22	0	45	1.53
131976--132007	15	2.1	15	100	0	64	50	12	0	37	1.41
133891--133931	18	2.2	19	86	4	57	48	2	24	24	1.63
140597--140625	2	14.5	2	100	0	58	51	0	0	48	1.00
144667--144704	19	2.0	20	89	5	60	47	0	10	42	1.38
145259--145303	22	2.0	22	83	8	56	51	0	2	46	1.13
146104--146166	30	2.1	31	81	3	74	50	15	1	31	1.54
147260--147321	29	2.1	29	82	11	72	66	6	0	27	1.16
151397--151441	22	2.1	22	95	4	83	51	4	4	40	1.42
156114--156170	20	2.9	19	80	12	62	38	3	3	54	1.35
160927--160975	23	2.1	23	100	0	98	26	8	12	53	1.66
161406--161439	16	2.1	16	100	0	68	44	8	0	47	1.34
163831--163891	24	2.6	24	82	7	72	6	1	19	72	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163831--163893	23	2.7	24	80	9	76	7	1	20	69	1.22
163898--163953	24	2.4	24	84	3	69	10	5	14	69	1.34
163900--163957	12	4.8	12	79	8	55	8	5	15	70	1.30
163888--163957	36	1.9	36	82	5	88	10	5	15	68	1.36
163879--164008	68	1.9	68	81	6	156	10	4	16	68	1.34
163951--163994	12	3.8	12	81	6	54	9	4	18	68	1.34
163906--164013	24	4.7	23	71	11	78	9	3	17	69	1.30
163986--164036	20	2.4	21	80	9	59	7	1	23	66	1.28
163932--164027	44	2.2	44	79	7	106	10	5	17	66	1.39
163977--164035	21	2.7	22	77	17	52	8	3	22	66	1.34
171461--171494	17	2.0	17	88	11	52	41	17	23	17	1.90
172485--172536	16	3.2	16	83	0	68	30	11	0	57	1.34
192677--192714	18	2.1	18	90	0	58	42	7	36	13	1.73
216230--216481	120	2.1	120	99	0	495	33	8	4	53	1.52
226344--226371	2	14.0	2	100	0	56	50	0	50	0	1.00
230640--230705	33	2.0	33	93	0	114	63	4	13	18	1.46
231206--231241	15	2.3	16	90	4	56	61	0	0	38	0.96
237586--237631	6	8.0	6	77	18	53	15	2	0	82	0.76
237589--237640	14	3.8	13	76	19	52	15	1	0	82	0.75
237586--237643	9	6.6	9	76	9	57	17	1	0	81	0.78
237589--237640	21	2.5	21	87	6	70	15	1	0	82	0.75
237595--237643	8	6.0	8	79	11	55	16	2	0	81	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237595--237635	17	2.6	16	88	7	57	14	2	0	82	0.76
237591--237643	13	4.2	13	81	15	58	16	1	0	81	0.79
237811--237845	16	2.2	16	89	0	52	74	8	8	8	1.23
238379--238405	12	2.2	12	100	0	54	51	7	7	33	1.58
240779--240819	3	14.0	3	87	5	57	39	0	0	60	0.96
251361--251438	33	2.4	33	100	0	156	8	37	12	41	1.75
254007--254146	68	2.1	68	97	0	262	44	20	12	22	1.85
254895--254949	27	2.0	28	85	3	76	14	23	16	45	1.84
259205--259266	28	2.2	28	91	5	99	37	1	0	61	1.06
259939--259974	18	2.1	17	90	10	56	8	11	0	80	0.90
265382--265467	40	2.2	40	100	0	172	36	11	13	38	1.82
277105--277150	22	2.0	24	83	8	60	63	0	8	28	1.24
277421--277479	20	2.7	23	76	7	61	54	0	5	40	1.23
277421--277518	43	2.2	44	80	14	103	54	0	5	40	1.23
288818--288924	53	2.0	53	100	0	214	27	14	26	31	1.95
299764--299802	8	4.9	8	84	9	53	7	0	5	87	0.68
299772--299810	19	2.1	19	85	9	53	10	0	7	82	0.86
300123--300164	16	2.6	16	88	7	50	47	2	4	45	1.36
300193--300256	9	6.8	9	76	16	51	39	1	0	59	1.07
300185--300247	20	3.2	20	84	8	85	36	1	0	61	1.05
300185--300263	23	3.7	21	81	11	81	37	1	0	60	1.05
300406--300444	21	1.9	21	89	5	62	33	20	7	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303974--304028	20	2.6	21	83	13	69	61	1	0	36	1.06
303974--304033	21	2.9	20	85	9	68	61	1	0	36	1.06
303907--304049	73	2.0	71	83	9	182	60	4	2	32	1.29
304257--304419	54	3.0	55	82	7	190	34	9	7	48	1.64
305370--305415	24	1.9	24	86	0	65	47	6	2	43	1.41
308677--308729	20	2.7	19	75	18	56	39	0	5	54	1.24
308919--309019	10	11.5	8	68	23	53	37	1	0	59	1.15
309501--309530	3	10.0	3	100	0	60	33	0	0	66	0.92
322500--322549	16	3.2	16	70	18	52	48	0	2	50	1.12
322498--322567	29	2.5	26	77	18	70	52	1	1	44	1.18
323076--323272	87	2.2	86	80	7	209	37	16	9	37	1.80
323441--323533	40	2.3	41	85	5	118	51	6	3	38	1.44
323441--323500	19	3.1	19	72	9	57	55	3	1	40	1.27
324545--324647	29	3.5	29	74	13	95	30	7	1	60	1.36
324606--324653	19	2.5	19	83	16	55	33	4	2	60	1.27
337842--337871	12	2.5	12	94	0	51	10	30	0	60	1.30
344770--344820	12	4.3	12	76	14	52	70	17	3	7	1.27
344816--344894	21	3.9	19	77	11	77	68	17	7	5	1.32
355738--355766	2	14.5	2	100	0	58	51	0	0	48	1.00
364468--364497	1	30.0	1	100	0	60	100	0	0	0	0.00
366664--366755	38	2.4	38	100	0	184	25	27	4	43	1.73
385183--385207	2	12.5	2	100	0	50	52	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385786--385899	42	2.7	42	87	1	149	28	7	18	45	1.77
387222--387250	13	2.1	14	93	6	51	31	6	37	24	1.82
396863--396898	18	2.1	17	94	5	63	50	0	0	50	1.00
397579--397617	16	2.4	16	86	4	51	48	0	2	48	1.15
397831--397879	22	2.4	20	80	10	55	30	12	4	53	1.57
404390--404423	17	2.0	17	94	0	59	26	23	17	32	1.97
405891--406083	29	6.7	29	70	18	118	32	8	25	33	1.87
405988--406172	59	3.1	59	84	4	196	33	4	24	36	1.77
406007--406204	30	6.6	30	79	8	181	36	4	22	36	1.73
407265--407308	6	7.5	6	89	5	72	47	0	0	52	1.00

Tables:   1   2   3