genome.fa.s14990.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014990.1 Kokia drynarioides strain JFW-HI SEQ_130034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  743029

Tables:   1   2   3   

This is table  2  of  3  ( 257 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407891--407982	17	5.4	16	81	11	87	56	1	1	41	1.13
407891--407982	34	2.7	33	78	9	96	56	1	1	41	1.13
407891--407934	6	7.7	6	80	19	58	50	0	2	47	1.13
415524--415560	2	18.5	2	94	0	65	51	0	0	48	1.00
419555--419625	31	2.4	31	83	9	85	60	12	1	25	1.40
421836--421875	20	2.0	20	90	4	64	77	5	0	17	0.94
427057--427135	27	3.0	26	84	3	95	30	12	31	25	1.93
427468--427514	13	3.5	13	82	8	51	17	0	6	76	0.98
427460--427499	13	3.1	13	82	10	55	12	2	2	82	0.87
428767--428809	11	3.9	11	84	0	59	4	0	44	51	1.22
437757--438105	53	6.6	53	90	1	558	28	16	21	33	1.95
437757--438105	105	3.3	105	92	0	572	28	16	21	33	1.95
440005--440059	7	7.9	7	95	0	101	29	54	0	16	1.42
441435--441467	16	2.1	16	88	5	50	36	6	0	57	1.23
441959--442261	149	2.0	149	100	0	606	39	8	7	43	1.64
447684--447743	28	2.0	31	84	12	81	25	3	10	61	1.43
450179--450222	17	2.6	17	88	0	61	38	11	15	34	1.84
457454--457563	58	1.9	58	84	3	150	49	13	13	23	1.78
459394--459434	22	1.9	21	85	5	55	63	12	7	17	1.50
461222--461247	2	13.0	2	100	0	52	50	0	50	0	1.00
464563--464816	57	4.3	59	72	10	191	33	22	14	29	1.94
465728--465798	24	3.0	24	85	0	79	52	8	11	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466357--466509	60	2.6	58	75	10	143	28	22	14	34	1.93
469827--469960	17	7.7	17	71	18	82	51	2	15	29	1.58
469893--469958	5	11.3	6	72	27	54	51	1	13	33	1.50
469893--469957	23	2.8	24	78	17	75	52	1	13	32	1.50
469893--469944	12	4.4	12	78	11	63	53	0	15	30	1.42
470148--470187	19	2.1	19	90	0	62	47	2	7	42	1.45
471259--471338	31	2.6	31	92	4	126	43	16	8	31	1.78
471525--471667	59	2.4	58	83	4	169	35	11	11	41	1.76
476151--476200	20	2.5	20	81	15	50	44	10	0	46	1.37
491691--491748	23	2.5	23	80	0	71	32	27	18	20	1.97
510626--510676	22	2.3	24	77	19	65	66	3	0	29	1.09
514334--514379	18	2.6	17	83	6	65	34	0	2	63	1.07
517770--517848	29	2.8	28	71	7	70	29	8	7	54	1.59
523099--523271	90	1.9	90	95	0	310	21	31	10	35	1.88
531332--531381	6	8.2	6	85	14	59	66	2	2	30	1.14
531493--531525	17	2.0	17	88	5	50	57	3	6	33	1.38
531635--531670	2	18.0	2	100	0	72	50	0	0	50	1.00
532583--532628	22	2.1	22	91	0	74	28	32	19	19	1.96
533654--533877	46	4.8	46	84	2	261	31	19	20	29	1.97
534809--534856	20	2.4	20	79	10	62	41	14	0	43	1.45
536557--536622	20	3.2	20	95	4	114	45	0	0	54	0.99
536577--536640	21	3.0	21	88	6	85	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537763--537826	22	3.0	22	86	11	96	51	0	0	48	1.00
538438--538466	2	14.5	2	100	0	58	48	0	0	51	1.00
538915--538951	19	1.9	19	88	0	56	43	0	0	56	0.99
539102--539136	18	1.9	18	88	0	52	62	0	0	37	0.95
539128--539435	142	2.2	141	90	2	476	49	7	13	29	1.69
541159--541209	21	2.4	21	73	0	57	31	3	11	52	1.56
541907--541967	30	2.0	32	83	6	81	27	3	6	62	1.36
543302--543334	14	2.3	15	89	5	50	21	18	6	54	1.64
554371--554421	24	2.1	24	85	3	75	52	0	1	45	1.12
554401--554461	32	1.9	31	87	9	88	47	0	0	52	1.00
555898--555932	3	12.0	3	87	6	54	0	31	0	68	0.90
560840--560884	14	2.9	16	80	16	58	57	0	0	42	0.98
562099--562186	43	2.0	43	93	0	149	23	6	31	37	1.81
562468--562512	21	2.1	22	83	4	56	37	2	4	55	1.32
565398--565454	28	2.1	27	83	3	69	31	12	0	56	1.36
567432--567479	14	3.2	14	78	16	51	29	0	4	66	1.10
573603--573704	50	2.0	50	100	0	204	40	13	14	31	1.85
580267--580351	21	4.0	21	72	6	64	40	25	7	27	1.81
587330--587363	14	2.5	13	85	4	50	17	0	2	79	0.86
594937--594970	17	2.0	17	100	0	68	47	5	17	29	1.71
601016--601077	28	2.2	28	88	5	90	27	8	27	37	1.85
601034--601457	59	7.2	57	73	9	200	35	4	25	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601179--601340	30	5.5	29	70	12	98	29	4	29	37	1.76
601178--601259	28	2.8	29	71	12	78	28	2	28	41	1.69
601229--601466	59	4.0	58	82	3	262	34	6	26	32	1.82
601238--601467	29	7.7	30	73	10	177	35	6	25	32	1.81
601238--601459	30	7.5	29	75	10	182	36	5	25	32	1.80
602872--602929	24	2.5	23	75	16	57	6	17	44	31	1.75
603127--603253	17	7.4	17	77	5	103	50	4	2	42	1.36
603142--603253	6	19.2	6	75	8	88	51	5	1	41	1.35
603146--603224	29	2.8	29	80	1	97	50	7	1	40	1.39
603182--603241	23	2.6	23	89	0	84	50	3	3	43	1.35
603147--603255	29	4.1	27	71	16	84	54	4	1	39	1.32
603152--603247	23	4.2	23	74	4	68	53	5	2	39	1.35
603232--603256	12	2.1	12	100	0	50	64	0	0	36	0.94
604842--604876	15	2.3	15	90	0	52	31	2	0	65	1.07
605476--605574	31	3.2	31	83	8	139	39	38	1	21	1.60
605562--605595	14	2.4	14	90	9	52	50	29	2	17	1.61
609015--609056	21	2.0	21	100	0	84	42	0	28	28	1.56
613356--613400	6	7.5	6	89	0	63	46	0	31	22	1.52
614920--615081	50	3.2	50	88	0	225	19	25	21	33	1.96
614893--615081	100	1.9	100	85	0	261	19	25	19	35	1.95
627649--627693	19	2.4	18	85	14	56	66	4	0	28	1.11
627654--627704	24	2.0	26	85	7	70	62	5	1	29	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631521--631695	59	3.0	59	81	9	214	32	4	29	34	1.76
631562--631732	30	5.8	29	76	14	154	33	3	27	35	1.74
631524--631732	60	3.5	58	81	12	203	33	3	28	34	1.75
631537--631733	30	6.6	29	73	15	134	32	4	26	36	1.76
633475--633570	6	16.7	6	75	12	94	47	2	0	50	1.12
633475--633570	17	5.6	17	83	1	102	47	2	0	50	1.12
633475--633538	29	2.5	24	77	22	76	46	3	0	50	1.17
633475--633570	34	2.8	34	82	7	122	47	2	0	50	1.12
633771--633853	21	4.0	21	93	3	141	39	0	0	60	0.97
633771--633882	21	5.1	22	83	14	135	38	0	0	60	1.03
633868--633916	19	2.8	18	79	11	57	38	2	2	57	1.22
633868--633926	20	3.1	19	80	7	66	38	1	1	57	1.19
633780--633926	21	7.1	20	70	21	81	39	0	1	58	1.12
634679--634745	31	2.2	30	84	10	82	25	17	10	46	1.80
635120--635160	3	13.3	3	89	5	64	68	0	0	31	0.90
635796--635840	24	1.9	23	95	4	81	26	15	4	53	1.61
641481--641558	39	2.0	39	97	0	147	30	21	17	29	1.97
644501--644530	10	3.1	10	95	4	53	40	0	30	30	1.57
649385--649435	27	2.0	27	88	7	79	56	0	0	43	0.99
649930--649971	22	1.9	22	100	0	84	33	11	4	50	1.60
653165--653213	17	3.1	16	82	5	55	42	6	0	51	1.27
654292--654565	118	2.3	119	92	1	444	36	11	20	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664128--664207	40	2.0	40	100	0	160	25	30	10	35	1.88
667340--667442	29	3.5	28	73	12	91	28	15	11	44	1.81
667650--667783	31	4.4	31	69	11	96	45	10	17	26	1.81
679131--679178	22	2.1	23	84	3	62	35	0	0	64	0.94
683112--683136	2	12.5	2	100	0	50	48	0	0	52	1.00
683830--683895	31	2.1	31	86	5	89	45	12	7	34	1.70
685714--685806	45	2.1	45	100	0	186	22	37	17	22	1.94
685801--685847	15	3.1	15	96	0	85	25	48	2	23	1.62
686080--686104	6	4.2	6	100	0	50	52	16	32	0	1.44
689407--689442	18	2.0	18	94	0	63	44	0	2	52	1.15

Tables:   1   2   3