genome.fa.s14995.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014995.1 Kokia drynarioides strain JFW-HI SEQ_130039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  341517

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292906--292947	20	2.1	20	86	0	57	28	28	9	33	1.88
298511--298550	3	13.3	3	100	0	80	67	0	32	0	0.91
298511--298589	12	6.7	12	85	5	81	73	2	24	0	0.96
299855--300089	49	4.8	49	72	12	187	39	19	26	15	1.91
299805--300185	99	3.9	99	83	5	409	39	18	26	15	1.91
300541--300751	39	5.4	39	69	5	167	27	29	17	25	1.97
300543--300751	78	2.7	78	85	3	278	27	29	17	25	1.97
300788--301861	206	5.2	206	88	2	1498	35	18	23	23	1.96
302887--302952	31	2.1	31	82	0	78	48	4	4	42	1.44
302947--303018	21	3.3	21	80	5	81	56	4	2	36	1.33
304115--304370	29	8.8	29	87	10	335	34	28	3	34	1.73
304110--304390	59	4.8	59	85	9	337	34	28	3	33	1.73
304115--304434	29	11.0	29	80	13	282	33	29	3	34	1.74
304236--304513	59	4.9	58	80	13	237	31	29	5	33	1.80
304410--304448	20	1.9	21	89	5	62	30	25	2	41	1.69
304329--304533	106	1.9	105	91	4	333	31	28	5	34	1.80
304434--304596	29	5.7	28	66	20	86	32	29	6	31	1.82
304384--304483	48	2.1	49	84	5	132	29	32	5	34	1.79
304553--304610	28	2.1	28	80	6	64	34	27	8	29	1.87
317311--317457	72	2.0	72	96	0	267	53	4	4	38	1.39
317307--317422	35	3.3	35	70	21	114	56	3	3	37	1.33
321185--321239	26	2.1	26	82	0	65	29	14	20	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321198--321240	14	3.2	14	74	12	54	30	9	20	39	1.84
321198--321247	26	1.9	26	87	0	73	30	10	20	40	1.85
322901--323069	91	1.9	91	85	5	234	34	9	11	44	1.74
323628--323773	62	2.4	62	88	2	213	41	11	13	34	1.80
323760--323847	28	3.0	28	93	5	140	44	19	6	29	1.76
325931--326039	30	3.6	30	92	2	184	33	28	2	35	1.72
328976--329149	84	2.1	82	95	2	312	35	20	23	20	1.96
330772--330826	12	4.6	12	97	0	101	41	7	41	9	1.64
338612--338750	38	3.7	38	83	7	142	22	29	21	26	1.99
338685--339315	39	16.3	39	68	13	234	24	30	19	25	1.98
338585--339351	78	9.9	78	77	3	530	25	29	19	25	1.99
338646--339178	232	2.3	232	82	4	603	24	30	20	24	1.98
338738--339277	154	3.5	155	79	6	443	25	30	19	25	1.98

Tables:   1   2

The End!