genome.fa.s14998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014998.1 Kokia drynarioides strain JFW-HI SEQ_130042, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53220

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8216--8248	9	3.7	9	91	0	57	60	9	30	0	1.27
15534--15561	2	14.0	2	100	0	56	50	0	0	50	1.00
21259--21299	3	13.7	3	89	0	64	0	29	2	68	1.03
32952--33003	19	2.8	18	82	11	61	71	3	0	25	1.03
33459--33549	43	2.1	43	81	0	110	41	18	13	26	1.87
33627--33690	34	2.0	32	84	9	85	34	25	14	26	1.94
33653--34528	43	20.3	43	77	4	631	38	23	15	22	1.93
33498--33796	160	1.9	160	81	1	366	38	24	13	23	1.91
33653--34528	430	2.0	431	88	1	1310	38	23	15	22	1.93
39918--40449	43	12.6	43	77	8	486	39	23	14	22	1.91
39923--42365	129	19.4	129	70	11	537	39	22	14	23	1.91
40400--40536	72	1.9	74	81	6	172	40	24	14	20	1.90
40546--42365	43	43.2	43	72	11	691	39	22	14	23	1.91
39933--40777	43	20.4	39	71	15	208	40	23	13	22	1.89
40523--40779	124	2.1	125	85	2	347	42	23	11	22	1.85
40473--44118	86	43.1	86	72	11	1000	37	21	16	24	1.93
41382--41470	40	2.2	40	82	4	99	40	23	14	21	1.90
41472--41633	41	4.0	40	75	14	109	42	24	10	22	1.85
41576--42031	161	2.8	161	78	7	389	38	23	15	23	1.92
41713--42888	43	27.7	43	75	4	697	36	22	17	23	1.94
42599--44060	129	11.4	129	73	9	470	35	21	18	24	1.96
42771--43031	143	1.8	143	87	0	387	34	20	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42892--44106	43	28.8	43	76	7	757	35	20	19	25	1.96
43385--43538	81	1.9	81	84	5	204	33	22	21	22	1.97
42890--44025	127	9.0	127	73	10	634	34	20	19	24	1.96
42892--44115	170	7.2	169	72	10	626	35	20	19	25	1.96
45884--45921	19	2.0	19	100	0	76	26	26	21	26	1.99
46320--47495	43	27.6	43	79	5	998	35	23	18	22	1.95
46320--48797	129	19.5	129	76	6	1827	35	23	18	23	1.95
47469--47522	27	2.0	27	96	0	99	37	31	7	24	1.83
47496--48167	43	15.6	42	80	3	553	36	22	17	23	1.95
47384--47608	113	2.0	113	81	1	263	36	24	16	23	1.94
47496--48167	86	7.8	86	80	2	623	36	22	17	23	1.95
47263--47729	242	1.9	241	81	2	551	35	23	18	22	1.96
48141--48194	27	2.0	27	92	0	90	37	29	7	25	1.83
48168--48797	43	14.6	43	78	2	573	35	22	18	24	1.96
48055--48258	113	1.8	113	80	4	250	36	22	16	24	1.94
52059--52083	12	2.1	12	100	0	50	36	8	16	40	1.77
52132--52171	17	2.3	18	86	4	55	72	2	0	25	0.97
52132--52192	18	3.3	18	73	13	52	73	3	0	22	0.97
52151--52191	21	1.9	22	85	5	57	78	4	0	17	0.93
52653--52852	43	4.7	43	88	0	247	38	24	16	22	1.93
52829--52875	23	2.0	23	95	0	85	40	21	17	21	1.91
52786--52918	66	2.0	66	94	0	230	37	22	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52852--53017	43	3.9	43	87	3	228	36	23	18	21	1.95
52743--52961	109	2.0	109	89	0	330	37	23	17	21	1.94
52856--53016	84	1.9	86	87	2	236	37	22	18	21	1.94

Tables:   1

The End!