genome.fa.s15001.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015001.1 Kokia drynarioides strain JFW-HI SEQ_130045, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  675174

Tables:   1   2   

This is table  1  of  2  ( 164 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32518--32609	45	2.0	46	95	2	168	27	11	6	54	1.61
32538--32610	23	3.2	23	64	24	64	27	13	5	53	1.62
32953--32996	18	2.4	19	81	14	56	45	2	2	50	1.27
33163--33269	52	2.1	52	96	0	196	19	23	23	33	1.97
33286--33417	60	2.2	60	95	1	237	22	24	26	26	2.00
33770--33838	35	1.9	36	82	2	86	53	7	1	37	1.38
35042--35093	22	2.4	21	81	9	61	55	0	1	42	1.10
37439--37463	3	8.3	3	100	0	50	68	0	0	32	0.90
38259--38328	32	2.2	32	89	2	106	34	7	7	51	1.57
39241--39427	93	2.0	93	94	0	329	37	15	13	33	1.86
40035--40193	80	2.0	80	93	0	273	18	8	12	61	1.55
47917--47943	13	2.1	13	100	0	54	29	25	14	29	1.95
47915--47948	13	2.8	12	86	8	50	38	20	11	29	1.88
48519--48577	5	11.8	5	78	7	66	23	0	1	74	0.91
50819--50889	30	2.4	29	81	9	81	32	1	8	57	1.37
67091--67165	39	1.9	39	81	10	91	48	0	8	44	1.32
75709--75761	21	2.5	20	85	11	63	33	26	11	28	1.91
79909--79939	16	1.9	16	93	0	53	51	3	19	25	1.62
80402--80646	53	4.6	53	88	0	348	26	13	24	36	1.92
81225--81275	21	2.4	21	100	0	102	19	9	29	41	1.84
82449--82486	11	3.4	11	82	17	51	68	0	0	31	0.90
82449--82486	12	3.3	12	85	10	53	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83625--83695	32	2.2	32	92	0	115	8	32	4	54	1.50
83964--84021	21	2.8	21	70	0	53	39	22	10	27	1.86
86604--86784	92	2.0	92	89	0	281	37	27	9	25	1.88
97301--97349	21	2.3	21	85	0	62	34	22	12	30	1.91
98738--98793	26	2.2	26	96	0	103	26	32	0	41	1.56
103187--103225	20	2.0	19	90	5	60	58	5	12	23	1.54
104094--104127	11	3.1	11	86	0	50	55	0	0	44	0.99
109404--109500	23	4.2	23	76	2	88	44	19	22	13	1.86
109352--109499	69	2.1	68	79	9	158	45	18	22	12	1.84
109399--109500	46	2.2	46	80	3	116	46	19	21	12	1.83
119693--119736	22	2.0	22	86	8	63	29	0	0	70	0.88
123398--123444	21	2.3	22	82	14	64	29	0	4	65	1.11
135885--136026	55	2.6	55	89	0	212	49	17	7	26	1.72
137733--137782	18	2.8	18	87	6	66	52	0	4	44	1.20
138269--138347	21	3.7	21	83	8	97	41	6	2	49	1.42
138916--138978	28	2.3	29	81	15	80	41	0	3	55	1.16
138934--138995	16	4.1	15	74	21	58	38	1	1	58	1.18
138935--138989	25	2.2	25	77	6	58	36	1	1	60	1.18
151579--151628	23	2.2	23	100	0	100	14	8	24	54	1.66
159586--159654	36	1.9	36	96	0	129	31	21	14	31	1.93
163953--164029	26	2.9	27	84	5	113	33	18	6	41	1.76
164501--164552	18	3.0	18	81	10	56	51	0	1	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166190--166222	10	3.1	11	86	8	50	39	0	0	60	0.97
181873--181928	28	2.0	28	100	0	112	39	7	21	32	1.80
193300--193335	15	2.5	14	90	4	54	41	0	0	58	0.98
193300--193339	14	2.7	15	92	3	64	40	0	0	60	0.97
193300--193346	14	3.3	14	84	3	58	44	0	0	55	0.99
194522--194584	7	10.0	6	78	20	51	79	1	1	17	0.89
194522--194580	12	4.5	13	76	19	61	77	1	1	18	0.93
194524--194584	25	2.4	25	80	19	74	80	1	1	16	0.88
194686--194722	13	2.9	13	84	15	51	27	0	2	70	1.01
205266--205308	18	2.3	18	80	11	52	34	0	0	65	0.93
213477--213508	3	10.7	3	100	0	64	65	34	0	0	0.93
218495--218541	2	23.5	2	100	0	94	51	0	0	48	1.00
223484--223527	21	2.2	20	83	4	52	22	9	22	45	1.80
225191--225218	2	14.0	2	100	0	56	50	0	0	50	1.00
226734--226816	29	2.8	30	78	10	107	48	3	0	48	1.19
226705--226816	59	1.9	59	85	3	154	47	3	0	48	1.25
228817--228880	22	2.9	22	77	13	69	39	1	3	56	1.25
239023--239114	30	3.1	30	64	9	80	43	13	6	36	1.69
239147--239195	16	3.2	16	75	16	59	36	0	6	57	1.24
240147--240189	4	10.8	4	85	9	61	0	23	0	76	0.78
240147--240189	11	3.6	11	85	14	59	0	23	0	76	0.78
240546--240578	16	2.1	16	94	0	57	15	30	15	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248479--248531	24	2.2	24	82	0	61	66	0	7	26	1.18
270842--270876	18	1.9	18	88	0	52	34	2	2	60	1.26
275313--275826	90	5.7	90	90	0	751	30	17	29	22	1.97
287601--287627	6	4.5	6	100	0	54	0	0	85	14	0.61
290863--291071	42	5.0	42	92	0	328	22	33	11	33	1.89
292250--292288	14	2.6	15	84	12	53	51	0	2	46	1.14
292227--292297	36	2.0	36	83	5	90	49	0	4	46	1.21
292435--292472	17	2.2	17	95	0	67	63	2	0	34	1.09
294272--294311	21	1.9	22	90	10	66	35	2	2	60	1.24
297435--297607	92	1.9	92	85	2	240	42	10	11	34	1.76
301492--301532	22	2.0	21	85	9	57	56	0	2	41	1.13
305440--305539	49	2.0	49	90	0	155	36	15	8	41	1.76
333872--333952	23	3.6	22	76	16	60	54	2	3	39	1.32
336945--337207	130	2.0	130	100	0	526	23	16	20	38	1.93
340002--340029	4	7.0	4	100	0	56	75	0	25	0	0.81
360182--360213	5	6.4	5	92	0	55	18	40	21	18	1.91
361204--361352	23	6.5	23	76	15	123	44	21	23	10	1.83
363467--363732	59	4.5	59	81	6	254	33	7	28	29	1.85
363642--363798	29	5.5	30	71	17	120	36	2	27	33	1.71
363495--363717	117	1.9	117	79	5	254	33	8	28	30	1.86
363620--363811	59	3.3	59	83	5	234	34	3	28	33	1.75
364954--365009	3	18.3	3	82	10	60	39	1	0	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365743--365790	16	2.9	16	78	3	51	50	2	0	47	1.12
365750--365833	16	5.1	16	79	11	66	51	2	2	44	1.27
367037--367079	18	2.5	17	76	3	50	62	2	0	34	1.08
384528--384571	20	2.1	22	83	8	56	29	9	2	59	1.41
384701--384790	9	10.1	9	74	13	62	33	2	4	60	1.29
384687--384737	25	1.9	25	84	11	66	35	7	1	54	1.40
384688--384725	19	2.1	19	85	14	53	36	5	2	55	1.37
384706--384779	19	4.1	18	76	13	64	29	2	4	63	1.26
384705--384774	35	1.9	37	83	11	92	28	2	4	64	1.27
384731--384796	27	2.4	26	82	7	69	30	0	7	62	1.23
389118--389182	33	2.0	33	100	0	130	53	12	9	24	1.67
390780--390813	18	1.9	18	88	5	52	29	0	5	64	1.17
390937--390983	22	2.1	22	84	7	60	63	0	0	36	0.94
390926--390986	32	1.9	31	87	9	88	60	0	0	39	0.97
391609--391646	12	3.2	12	88	0	58	31	42	0	26	1.56
391611--391645	18	1.9	18	88	0	52	34	40	0	25	1.56
394271--394305	2	17.5	2	100	0	70	51	48	0	0	1.00
394986--395028	23	1.9	22	86	13	61	55	0	9	34	1.32
413666--413703	13	2.9	13	88	7	51	47	0	7	44	1.32
414504--414538	12	2.8	12	95	4	61	8	0	0	91	0.42
418083--418118	18	2.0	18	88	0	54	44	0	16	38	1.48
421913--421946	16	2.1	16	88	0	50	29	0	29	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423299--423383	38	2.2	38	97	2	161	34	27	4	34	1.78
428415--428456	21	2.0	21	85	4	57	80	2	2	14	0.90
428419--428451	12	2.6	13	90	4	50	81	3	0	15	0.80
433811--433843	17	1.9	18	88	11	52	48	0	9	42	1.35
433845--433907	26	2.3	27	78	13	67	52	0	6	41	1.27
440316--440381	31	2.1	30	83	5	78	16	15	12	56	1.68
440531--440581	20	2.6	20	87	3	68	50	0	3	45	1.20
440728--440925	99	2.0	99	83	0	252	24	30	6	38	1.81
454173--454266	47	2.0	47	95	0	170	10	24	4	60	1.47
458052--458086	3	11.7	3	87	0	52	31	0	40	28	1.57

Tables:   1   2