genome.fa.s15002.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015002.1 Kokia drynarioides strain JFW-HI SEQ_130046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  397637

Tables:   1   2   

This is table  2  of  2  ( 165 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275896--276266	59	6.3	58	76	13	187	31	26	4	37	1.76
277637--277693	23	2.5	22	72	13	53	19	5	8	66	1.38
277857--277935	29	2.7	29	79	13	81	63	3	2	30	1.25
283695--283754	26	2.4	25	83	8	68	55	0	1	43	1.10
283698--283765	33	2.1	32	83	10	84	55	0	2	41	1.15
287221--287260	21	1.9	21	85	10	55	37	17	20	25	1.94
288903--289084	96	1.9	96	83	6	235	35	14	21	28	1.93
289308--289370	29	2.2	29	88	2	92	26	9	30	33	1.88
289371--289549	29	6.1	29	77	10	177	36	0	26	36	1.61
289362--289549	59	3.2	58	84	4	225	35	0	26	37	1.61
290641--290699	11	5.3	11	76	17	50	57	1	5	35	1.31
291655--291711	15	3.5	15	73	17	60	45	0	3	50	1.18
291739--291776	13	2.9	14	88	7	53	50	0	0	50	1.00
296718--296760	19	2.3	19	80	8	52	48	0	6	44	1.29
300317--300646	30	11.0	29	78	9	247	37	1	25	35	1.64
300344--300634	90	3.3	89	77	11	283	37	1	24	36	1.64
311440--311510	17	4.1	17	68	13	54	46	0	4	49	1.21
312169--312220	3	17.0	3	80	4	50	57	1	1	38	1.21
313228--313515	30	9.7	30	72	14	197	34	27	3	34	1.75
313237--313491	58	4.4	58	77	10	227	34	27	4	33	1.77
313237--313515	59	4.7	60	78	10	213	34	27	3	34	1.75
313245--313407	88	1.8	88	85	8	233	33	29	3	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313237--313519	117	2.4	117	80	10	303	33	27	4	33	1.77
313293--313522	58	3.9	58	77	7	232	32	29	5	33	1.80
325028--325898	206	4.2	206	88	1	1214	35	18	23	22	1.95
325028--325893	411	2.1	412	89	3	1305	35	18	23	22	1.95
326220--326314	6	16.7	6	67	18	60	45	1	3	50	1.24
326223--326289	17	3.9	17	84	5	91	46	1	1	50	1.19
326220--326314	17	5.6	17	79	12	88	45	1	3	50	1.24
326971--327033	9	6.9	9	75	1	63	53	1	3	41	1.26
326971--327033	18	3.4	18	80	2	72	53	1	3	41	1.26
328270--328375	30	3.6	29	81	11	126	35	31	3	29	1.75
328270--328465	59	3.3	58	78	4	180	33	31	5	30	1.79
329758--329795	20	1.9	20	88	0	58	52	0	0	47	1.00
342333--342370	15	2.4	16	82	8	51	57	0	2	39	1.12
355989--356039	9	5.7	9	90	0	66	13	13	47	25	1.80
357305--357376	22	3.3	22	88	3	101	31	8	22	37	1.84
357953--357977	11	2.3	11	100	0	50	0	8	0	92	0.40
360488--360529	18	2.2	19	87	8	59	64	0	0	35	0.94
360488--360529	10	4.4	10	91	5	61	64	0	0	35	0.94
360488--360530	19	2.2	20	87	4	61	65	0	0	34	0.93
360495--360537	10	4.7	9	83	13	52	60	2	0	37	1.10
392068--392094	2	13.5	2	100	0	54	0	48	0	51	1.00
394039--394072	16	2.1	17	88	5	52	35	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394816--394873	30	1.9	30	83	13	75	56	5	12	25	1.56

Tables:   1   2

The End!