genome.fa.s15005.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015005.1 Kokia drynarioides strain JFW-HI SEQ_130049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  495468

Tables:   1   2   

This is table  2  of  2  ( 173 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356239--356282	20	2.2	20	84	8	54	45	2	0	52	1.13
359092--359163	28	2.6	27	79	14	74	59	1	1	37	1.15
359134--359171	20	1.9	20	94	0	67	57	0	0	42	0.98
359149--359202	28	1.9	28	84	0	72	50	0	0	50	1.00
362321--362424	51	2.0	51	100	0	208	43	13	9	33	1.77
362339--362419	26	3.2	26	63	16	69	43	13	8	34	1.75
370123--370154	16	2.0	16	100	0	64	6	25	12	56	1.59
377837--377865	4	7.5	4	92	7	51	75	0	24	0	0.80
377831--377875	19	2.4	18	82	10	54	75	0	22	2	0.91
378026--378060	18	1.9	18	94	0	61	28	2	11	57	1.48
379025--379070	14	3.1	15	71	22	51	60	8	0	30	1.26
379023--379072	16	3.2	16	73	21	61	60	8	0	32	1.26
380780--380916	45	3.0	45	89	4	197	33	28	18	19	1.95
384292--384372	4	20.2	4	76	9	67	0	33	0	66	0.92
384292--384355	20	3.2	20	82	8	78	0	37	0	62	0.95
385566--385592	9	3.0	9	100	0	54	11	11	11	66	1.45
385913--386317	167	2.4	166	79	6	460	44	7	9	38	1.65
389833--389899	35	1.9	35	100	0	134	34	32	8	23	1.86
390408--390452	2	22.5	2	100	0	90	48	0	0	51	1.00
392884--392910	7	3.9	7	100	0	54	55	0	0	44	0.99
395356--395442	41	2.1	41	100	0	174	14	18	36	29	1.91
395695--395987	153	1.9	153	100	0	586	19	17	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399202--399323	49	2.4	52	78	10	137	32	6	4	55	1.47
400815--400865	21	2.4	22	80	6	61	60	5	1	31	1.31
401847--401911	32	2.0	32	100	0	130	36	21	3	38	1.69
404024--404061	18	2.1	18	95	0	67	21	7	0	71	1.11
406151--406317	62	2.6	62	84	9	221	20	2	31	45	1.64
408790--408971	52	3.5	51	78	4	195	28	14	24	32	1.94
418582--418821	52	4.6	52	85	2	268	28	15	21	34	1.94
419487--419535	21	2.3	21	85	0	62	34	10	28	26	1.89
422582--422625	17	2.6	17	92	0	70	43	2	20	34	1.64
428577--428642	30	2.2	30	94	0	114	34	1	22	40	1.63
433650--433714	34	1.9	34	96	3	123	47	12	4	35	1.62
442015--442066	23	2.3	23	86	10	79	46	13	23	17	1.83
442018--442070	22	2.4	23	90	6	83	45	11	22	20	1.83
448896--448967	37	2.0	35	92	7	119	70	0	8	19	1.11
450164--450293	54	2.4	54	82	5	163	43	12	6	36	1.69
450191--450293	54	1.9	54	90	7	165	45	13	6	33	1.70
456896--456929	18	1.9	17	88	5	50	58	0	0	41	0.98
460095--460140	22	2.1	22	84	8	58	54	8	0	36	1.32
460717--460777	29	2.1	30	84	3	79	50	3	3	42	1.34
465837--465952	56	2.1	56	98	0	223	38	10	16	34	1.83
467118--467153	16	2.2	16	90	9	56	19	2	8	69	1.27
467508--467562	18	3.1	18	69	10	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474311--474345	18	1.9	18	88	0	52	2	28	0	68	1.04
475543--475623	31	2.7	29	81	11	74	35	6	13	44	1.69
475574--475650	31	2.6	30	80	10	77	37	7	11	42	1.70
476381--476413	17	2.0	17	88	5	50	30	3	0	66	1.06
476693--476723	7	4.4	7	100	0	62	87	12	0	0	0.55
479748--480102	177	2.0	177	87	2	516	37	9	18	34	1.83
481038--481062	10	2.5	10	100	0	50	0	8	72	20	1.10
486147--486181	17	2.1	17	94	0	61	28	14	17	40	1.88
494226--494259	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2

The End!