genome.fa.s15036.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015036.1 Kokia drynarioides strain JFW-HI SEQ_130080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  520311

Tables:   1   2   

This is table  1  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10483--10565	33	2.5	32	76	5	76	18	20	30	31	1.96
17429--17479	26	1.9	27	92	4	86	50	5	0	43	1.26
18568--18645	30	2.5	30	81	6	86	25	12	10	51	1.71
30937--31380	48	9.2	48	76	6	344	20	2	50	27	1.59
30937--31380	96	4.6	96	81	2	507	20	2	50	27	1.59
30919--31380	144	3.2	143	77	9	445	20	1	50	26	1.58
30937--31380	192	2.3	192	85	2	579	20	2	50	27	1.59
31254--31335	27	3.3	27	66	25	70	21	2	46	29	1.64
31396--31456	30	2.0	30	100	0	122	16	3	39	40	1.65
31666--31912	96	2.6	96	86	5	338	15	8	43	31	1.78
31667--31912	48	5.1	48	72	5	210	15	8	43	31	1.78
31952--32040	36	2.5	36	84	0	106	23	11	42	22	1.85
31925--32304	150	2.5	148	91	1	607	22	10	40	26	1.86
32111--32190	36	2.2	36	86	0	106	25	8	40	26	1.84
33254--33288	12	2.9	12	91	0	61	8	0	74	17	1.06
33254--33288	6	5.8	6	93	0	52	8	0	74	17	1.06
33349--33427	24	3.3	24	70	19	83	18	1	45	34	1.58
33350--33756	48	8.4	48	78	4	359	18	3	47	30	1.65
33729--33849	45	2.6	46	84	3	154	15	12	36	35	1.85
33830--33963	48	2.8	48	84	0	160	25	8	45	20	1.80
37086--37130	24	2.0	24	86	8	67	44	13	0	42	1.43
41451--41480	7	4.3	7	100	0	60	26	13	30	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52681--52730	26	1.9	25	84	15	66	38	6	6	50	1.52
57978--58043	31	2.1	31	83	5	80	30	18	12	39	1.87
60306--60334	13	2.2	13	100	0	58	20	27	6	44	1.77
74195--74294	49	2.0	49	100	0	200	49	12	14	25	1.77
77515--77785	30	9.1	29	75	10	163	33	24	3	38	1.73
77522--77743	91	2.5	89	77	10	231	33	23	3	39	1.72
77662--77785	59	2.1	60	80	1	133	34	25	1	37	1.66
78380--78417	12	3.3	12	82	10	53	78	0	5	15	0.91
79317--80401	211	5.2	208	80	3	1030	23	21	15	38	1.92
79317--80401	420	2.6	420	79	3	1070	23	21	15	38	1.92
81285--81354	36	2.0	35	88	2	104	14	22	17	45	1.84
84722--84755	15	2.3	15	89	0	50	26	23	11	38	1.89
89786--89912	23	5.4	23	77	5	112	13	21	20	44	1.85
96232--96267	17	2.2	17	95	5	65	38	11	0	50	1.38
102881--102917	16	2.3	17	90	9	60	40	2	5	51	1.39
103302--103425	40	3.1	40	100	0	248	26	7	18	47	1.74
104992--105043	16	3.4	16	79	15	74	61	3	0	34	1.14
106320--106356	18	2.1	18	89	0	56	24	32	27	16	1.96
110783--110813	9	3.4	9	95	0	53	38	0	0	61	0.96
113251--113458	65	3.2	65	71	8	172	25	19	20	34	1.96
113273--113517	129	1.9	129	83	3	314	24	17	22	35	1.95
114049--114083	16	2.1	17	89	5	54	51	0	5	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115388--115426	20	1.9	21	89	5	62	2	12	2	82	0.89
121682--121731	21	2.4	22	80	10	59	34	0	4	62	1.14
126769--127086	158	2.0	158	96	1	584	37	13	11	37	1.81
136099--136153	20	2.7	21	91	5	94	38	12	7	41	1.71
136567--136597	2	15.5	2	100	0	62	0	48	0	51	1.00
145250--145307	24	2.8	20	74	20	55	32	3	0	63	1.11
148831--148860	7	4.3	7	100	0	60	26	0	0	73	0.84
153222--153307	23	3.7	23	83	6	104	12	26	17	43	1.85
153220--153321	46	2.2	48	80	16	126	12	27	19	40	1.88
153301--153343	22	2.0	22	95	0	77	16	25	23	34	1.95
153325--153422	26	3.8	26	95	2	171	12	28	20	38	1.89
158100--158163	2	32.0	2	100	0	128	50	0	0	50	1.00
158692--158867	89	2.0	90	96	1	327	40	10	4	44	1.59
160639--160671	16	2.0	17	94	5	59	45	18	6	30	1.73
160763--160829	33	2.0	33	100	0	134	35	23	22	17	1.95
162447--162489	3	14.7	3	95	4	79	67	0	0	32	0.91
168920--168984	29	2.2	29	83	0	85	46	12	3	38	1.57
172883--172933	24	2.1	24	88	0	75	21	13	11	52	1.72
174843--174922	24	3.3	24	91	0	115	27	8	7	56	1.57
178253--178288	18	1.9	19	94	5	65	47	2	0	50	1.15
179661--179717	29	1.9	30	85	3	80	33	7	10	49	1.64
179909--179973	31	2.3	27	77	15	67	43	13	7	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190176--190256	30	2.7	30	78	1	90	11	24	16	48	1.78
190397--190445	22	2.4	19	78	15	53	51	0	2	46	1.12
190403--190445	21	2.0	22	90	4	70	48	0	0	51	1.00
192480--192647	89	1.9	89	88	0	255	26	8	19	46	1.77
195622--195656	2	17.5	2	100	0	70	0	51	0	48	1.00
196847--196903	29	2.0	29	89	0	87	35	10	8	45	1.70
198178--198250	26	2.7	27	85	4	85	58	9	12	19	1.60
198178--198235	28	2.1	28	93	0	98	63	6	13	15	1.49
200501--200540	13	2.9	14	77	7	55	40	0	7	52	1.30
212263--212287	11	2.3	11	100	0	50	52	0	0	48	1.00
216051--216093	22	2.0	22	86	4	61	48	0	2	48	1.14
216343--216375	3	11.0	3	100	0	66	33	0	0	66	0.92
217106--217153	14	3.5	13	76	18	53	77	2	10	10	1.09
224295--225041	60	12.6	60	80	7	665	38	17	20	23	1.93
224295--224977	119	5.8	119	80	8	666	39	17	20	23	1.93
224294--225045	179	4.2	177	75	12	571	38	17	20	23	1.93
228038--228116	27	2.9	27	94	1	131	44	10	10	35	1.72
230782--230823	2	21.0	2	100	0	84	50	0	0	50	1.00
235077--235194	59	2.1	59	85	4	161	37	18	9	34	1.83
237478--237506	6	4.8	6	100	0	58	31	68	0	0	0.89
248587--248664	36	2.2	36	84	13	108	61	5	3	29	1.35
250955--251080	61	2.0	62	89	1	191	38	14	25	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259673--259711	21	1.9	21	89	5	62	17	23	0	58	1.38
259687--259733	18	2.7	18	80	9	53	25	14	2	57	1.49
265266--265703	214	2.0	217	89	3	677	29	21	19	29	1.98
266624--266685	31	2.0	31	90	0	97	41	11	4	41	1.62
273691--273724	17	2.0	17	100	0	68	41	17	17	23	1.90
274394--275271	303	2.9	297	79	6	966	41	20	9	28	1.82
277227--277347	63	1.9	64	89	5	192	33	14	9	42	1.79
287682--287732	26	2.0	26	100	0	102	27	7	1	62	1.33
288444--288477	13	2.6	13	80	0	50	55	0	0	44	0.99
301566--301608	22	1.9	23	85	4	61	39	0	6	53	1.28
305688--305810	60	2.0	60	82	0	147	15	19	19	45	1.85
308219--308247	2	14.5	2	100	0	58	48	0	0	51	1.00
309180--309236	28	2.1	27	87	9	80	52	1	0	45	1.11
310518--310567	21	2.5	20	80	6	64	56	2	16	26	1.51
314013--314098	28	3.0	28	81	6	111	48	1	0	50	1.08
314017--314088	7	10.4	7	77	8	67	44	1	0	54	1.08
314434--314590	60	2.7	60	78	5	167	52	6	15	25	1.67
314434--314605	59	2.9	60	78	5	188	52	6	16	25	1.67
314626--314764	50	2.6	56	75	18	159	63	7	0	28	1.26
314674--314755	25	3.3	25	71	19	80	60	8	1	29	1.33
314689--314768	24	3.2	25	72	12	83	62	10	0	27	1.27
314738--314802	30	2.1	32	83	13	82	67	12	0	20	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314659--314776	50	2.4	49	84	5	166	64	8	0	26	1.28
348407--348504	29	3.3	28	76	9	79	41	14	11	32	1.81
350102--350171	6	11.3	6	74	17	63	2	22	0	74	0.95
350102--350171	19	3.8	18	71	19	63	2	22	0	74	0.95
352297--352330	17	2.1	17	88	5	52	52	5	2	38	1.41
353327--353365	19	2.0	21	85	10	55	56	5	2	35	1.35
355155--355188	16	2.1	17	88	5	52	23	41	14	20	1.89
357117--357152	16	2.1	17	90	10	56	58	0	5	36	1.22
370120--370154	12	2.6	14	86	13	56	68	17	5	8	1.35
370220--370265	24	1.9	24	82	8	58	45	4	47	2	1.34

Tables:   1   2