Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015036.1 Kokia drynarioides strain JFW-HI SEQ_130080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  520311

Tables:   1   2   

This is table  2  of  2  ( 171 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
371219--371269
24
2.1
24
85
0
66
31
5
45
17
1.72
377064--377116
22
2.3
23
84
9
65
45
1
1
50
1.23
378163--378217
20
2.8
19
83
10
67
54
1
0
43
1.10
383941--383996
29
1.9
29
96
0
103
57
7
0
35
1.26
414119--414184
26
2.5
26
80
11
73
45
0
4
50
1.22
418481--418505
5
5.0
5
100
0
50
0
60
0
40
0.97
420863--420892
14
2.1
14
93
0
51
26
3
0
70
1.03
430477--430515
18
2.2
18
86
9
53
43
7
5
43
1.55
430581--430612
15
2.1
15
94
0
55
71
0
0
28
0.86
435992--436032
18
2.2
20
86
8
59
73
0
7
19
1.07
442274--442308
17
2.0
18
88
5
54
65
0
2
31
1.07
442765--442804
17
2.5
17
81
18
50
60
0
5
35
1.19
444175--444226
26
2.0
26
96
0
95
44
0
17
38
1.49
448599--448641
5
7.8
5
82
17
50
20
0
4
74
1.00
448586--448641
28
2.0
29
89
10
89
21
0
5
73
1.03
449112--449194
29
2.9
27
79
17
78
61
1
0
37
1.04
449619--449681
30
2.1
30
85
5
83
52
4
6
36
1.48
449850--449913
22
3.0
20
82
17
60
29
4
1
64
1.23
449866--449913
21
2.2
20
89
7
69
27
6
0
66
1.15
449772--450098
106
3.1
105
90
4
505
37
3
2
56
1.28
449973--450019
22
2.1
22
84
0
58
25
4
2
68
1.19
449866--449999
21
6.4
21
63
17
64
35
2
1
59
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
450093--450121
2
14.5
2
100
0
58
48
0
0
51
1.00
458798--458886
23
3.8
23
83
4
108
39
16
12
31
1.86
470127--470165
19
2.0
21
85
10
55
48
2
5
43
1.38
470502--470544
20
2.2
20
87
8
61
55
2
0
41
1.12
470563--470596
17
2.0
17
88
0
50
47
0
0
52
1.00
472308--472377
34
2.1
34
100
0
140
51
2
20
25
1.61
476720--476755
11
3.0
13
76
23
51
50
8
5
36
1.56
477523--477580
20
2.8
20
79
10
55
41
12
0
46
1.41
477838--477908
10
6.9
11
75
15
55
66
1
7
25
1.25
484622--484659
6
6.3
6
100
0
76
34
0
15
50
1.45
485094--485125
2
16.5
2
93
6
57
50
0
0
50
1.00
487849--487904
28
2.0
27
93
3
94
28
5
10
55
1.56
488129--488174
18
2.6
18
86
6
58
56
2
0
41
1.11
489230--489275
23
2.0
23
87
8
67
17
17
0
65
1.28
490320--490377
25
2.5
22
77
17
64
56
3
6
32
1.42
492138--492175
6
6.3
6
87
0
58
15
60
2
21
1.47
495537--495715
89
2.0
89
97
0
340
44
22
8
24
1.80
495861--495907
3
15.7
3
95
0
85
65
2
0
31
1.04
501087--501210
23
5.5
22
83
5
95
40
24
23
12
1.88
501083--501210
68
1.9
69
80
4
152
41
23
23
11
1.87
508209--508304
23
4.2
22
85
2
111
38
26
22
12
1.90
511029--511128
45
2.2
45
83
5
121
33
4
13
50
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
511076--511284
116
1.8
112
82
8
269
34
5
11
47
1.63
511076--511284
56
3.7
55
83
6
222
34
5
11
47
1.63
514885--514919
2
17.5
2
100
0
70
0
51
0
48
1.00
518364--518397
10
3.3
10
92
8
59
91
0
8
0
0.43
518364--518397
11
3.2
11
95
4
61
91
0
8
0
0.43
520154--520235
4
20.0
4
79
14
78
68
0
30
1
0.98
520154--520235
17
5.0
16
74
14
78
68
0
30
1
0.98

Tables:   1   2

The End!