genome.fa.s15038.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015038.1 Kokia drynarioides strain JFW-HI SEQ_130082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  531193

Tables:   1   2   

This is table  2  of  2  ( 224 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265663--265713	26	2.0	26	92	3	86	37	0	1	60	1.08
266300--266380	37	2.2	37	100	0	162	27	24	22	25	2.00
266819--266951	29	4.6	29	75	13	121	32	27	6	33	1.81
266826--266951	58	2.2	57	84	7	173	33	28	5	32	1.80
268031--268069	15	2.6	15	83	0	51	56	15	10	17	1.66
268250--268296	18	2.6	18	76	10	51	68	2	0	29	1.02
270623--270702	30	2.7	30	76	5	83	26	16	21	36	1.94
279088--279439	23	15.3	23	85	1	445	34	5	14	45	1.69
281673--281721	19	2.9	17	77	20	50	61	4	26	8	1.42
282669--282716	24	1.9	26	84	16	66	45	0	22	31	1.53
283221--283265	19	2.4	19	81	7	56	37	0	4	57	1.19
284080--284126	21	2.2	22	92	3	78	14	6	0	78	0.93
286871--286927	13	4.5	13	74	14	57	19	3	0	77	0.92
286865--286927	18	3.4	18	80	12	65	20	3	0	76	0.93
288409--288468	19	3.1	20	76	7	61	38	0	6	55	1.27
289216--289262	21	2.2	22	92	3	78	14	8	2	74	1.15
292010--292264	23	11.1	23	87	1	350	34	5	14	45	1.69
296336--296492	48	3.3	48	92	1	262	28	10	10	49	1.71
296881--297034	78	2.0	79	93	1	265	37	16	16	29	1.90
297068--297747	343	2.0	341	94	1	1182	24	16	17	41	1.89
302124--302180	30	1.9	30	96	0	105	19	36	3	40	1.69
306149--306186	6	6.3	6	96	0	58	5	0	47	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306143--306186	18	2.4	18	84	0	61	9	0	45	45	1.35
306152--306190	6	6.5	6	96	0	51	7	0	38	53	1.30
306152--306190	12	3.2	12	92	0	60	7	0	38	53	1.30
315696--315775	40	2.0	41	85	2	108	25	2	7	65	1.32
317437--317473	19	1.9	19	88	0	56	59	0	0	40	0.97
331140--331173	17	1.9	18	94	5	61	70	2	5	20	1.21
331140--331174	18	1.9	18	94	0	61	71	2	5	20	1.19
332839--332871	2	16.5	2	100	0	66	48	0	0	51	1.00
351099--351235	51	2.7	51	86	0	175	33	15	23	27	1.95
356187--356233	17	2.6	17	80	6	58	61	2	4	31	1.27
356278--356316	21	1.9	19	90	10	60	64	0	0	35	0.94
356815--356857	14	3.1	14	83	6	52	69	9	0	20	1.15
359788--359831	20	2.2	20	84	12	54	43	9	6	40	1.63
363726--363785	17	3.5	17	86	0	75	45	0	1	53	1.10
363723--363799	23	3.4	24	77	15	76	46	1	1	50	1.17
363722--363787	6	11.5	6	73	15	59	48	0	1	50	1.10
364478--364518	16	2.6	16	81	11	50	58	9	4	26	1.50
365568--365872	29	10.3	30	78	13	312	33	29	4	32	1.78
365568--365885	59	5.4	59	88	1	467	33	29	4	32	1.77
366289--366441	51	3.1	51	63	21	135	30	20	13	34	1.92
366246--366499	96	2.7	96	94	0	438	29	21	12	35	1.91
369900--369924	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371660--371696	19	1.9	19	88	0	56	35	8	10	45	1.69
373197--373239	23	1.9	22	81	13	52	11	16	6	65	1.46
374358--374511	74	2.1	75	85	3	204	39	11	10	38	1.76
379949--379974	13	2.0	13	100	0	52	30	0	0	69	0.89
385310--385353	20	2.1	21	87	4	63	40	25	0	34	1.56
387092--387126	11	3.1	11	91	4	52	31	0	2	65	1.07
387245--387309	30	2.2	30	94	0	112	56	15	4	23	1.57
389526--389621	22	4.3	22	71	17	90	44	4	2	48	1.33
394260--394391	49	2.7	49	71	11	117	26	21	29	22	1.99
395087--395140	21	2.6	20	85	11	65	31	24	12	31	1.93
395727--395905	61	3.0	60	89	3	245	30	23	12	33	1.92
395853--396041	51	3.6	51	83	6	202	31	24	12	31	1.92
397489--397527	18	2.2	18	86	9	53	46	12	33	7	1.71
403468--403501	17	2.0	17	88	11	52	20	23	32	23	1.98
415942--416054	54	2.2	52	87	4	156	33	15	19	31	1.93
416006--416489	61	8.0	60	71	12	266	26	16	15	42	1.87
415956--416496	123	4.5	120	74	10	418	26	16	16	41	1.88
416887--417002	57	2.0	57	85	9	157	35	15	13	35	1.87
418787--418932	71	2.1	71	98	0	283	31	28	15	24	1.96
420869--420914	20	2.4	20	82	7	51	30	0	8	60	1.26
426688--426718	16	1.9	16	93	0	53	22	0	29	48	1.51
427780--427876	43	2.3	43	85	3	133	44	13	11	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429786--429837	25	2.1	26	85	7	72	51	9	0	38	1.35
430012--430070	4	14.0	4	75	10	55	1	25	0	72	0.93
436113--436172	26	2.3	26	85	2	86	23	15	21	40	1.91
436660--436706	22	2.1	22	84	4	58	57	21	2	19	1.51
437745--437927	30	6.2	30	81	2	190	38	21	3	37	1.70
442098--442157	31	1.9	31	100	0	120	36	6	26	30	1.82
442713--442740	14	2.0	14	100	0	56	42	14	21	21	1.88
448262--448716	227	2.0	227	96	0	838	34	18	22	25	1.96
449639--449785	50	2.9	50	87	2	197	36	21	24	18	1.95
449982--450306	40	8.2	40	82	6	340	32	24	16	26	1.96
449982--450306	79	4.1	80	82	7	401	32	24	16	26	1.96
449982--450306	119	2.7	119	81	5	386	32	24	16	26	1.96
450866--451050	63	2.9	63	90	3	282	43	0	3	52	1.17
452138--452340	30	6.8	30	77	8	144	35	21	5	36	1.78
452163--452340	60	3.0	60	76	6	173	37	20	5	37	1.75
454368--454423	25	2.2	25	80	0	67	32	19	25	23	1.98
456447--456516	3	23.3	3	91	0	113	28	0	4	67	1.10
469361--469418	26	2.2	26	84	6	73	32	15	8	43	1.77
470902--470926	7	3.6	7	100	0	50	72	0	28	0	0.86
481428--481485	21	2.5	24	81	10	68	41	24	5	29	1.76
486313--486557	52	4.7	51	81	5	249	33	23	14	28	1.94
486313--486557	105	2.3	104	83	3	287	33	23	14	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487821--487940	36	3.3	36	83	0	141	36	21	9	32	1.85
491416--491467	22	2.3	24	78	18	67	59	3	0	36	1.16
494227--494360	71	1.9	71	84	0	178	41	8	8	40	1.68
495207--495268	31	2.0	31	90	3	99	41	20	11	25	1.86
496706--496777	30	2.4	31	81	6	85	22	12	16	48	1.79
499068--499111	21	2.1	21	87	8	63	38	4	0	56	1.20
500576--500611	2	18.0	2	100	0	72	50	0	0	50	1.00
501012--501055	21	2.0	21	87	12	63	54	0	0	45	0.99
503786--503830	6	7.8	6	90	9	76	17	35	0	46	1.49
504340--504399	29	2.0	30	87	9	88	61	6	6	25	1.45
507805--507899	30	3.2	29	77	7	100	35	24	8	31	1.85
508351--508585	109	2.2	108	82	5	273	29	14	17	39	1.88
513546--513596	19	2.6	19	73	11	50	23	5	11	58	1.55
517036--517060	13	1.9	13	100	0	50	56	8	28	8	1.57
524116--524172	29	2.0	29	89	0	87	43	10	3	42	1.56
527875--528234	132	2.8	131	95	2	636	56	7	10	25	1.60

Tables:   1   2

The End!