genome.fa.s15039.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015039.1 Kokia drynarioides strain JFW-HI SEQ_130083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  570965

Tables:   1   2   

This is table  1  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14079--14134	13	4.3	13	76	13	53	44	3	14	37	1.62
14520--14563	18	2.5	17	88	3	61	36	11	4	47	1.60
17696--17993	128	2.3	128	100	0	596	29	15	15	39	1.87
21149--21182	18	1.9	18	88	5	52	29	0	5	64	1.17
23861--23894	15	2.3	15	89	0	50	50	32	8	8	1.64
25048--25078	3	10.3	3	100	0	62	32	0	0	67	0.91
31163--31212	22	2.3	22	92	0	82	14	22	32	32	1.93
32040--32074	3	11.7	3	100	0	70	31	0	0	68	0.90
32150--32192	19	2.3	19	87	0	59	18	0	4	76	0.95
34695--34749	27	2.0	27	96	0	101	25	9	38	27	1.86
42199--42229	15	2.1	14	94	5	53	38	12	6	41	1.69
43432--43470	20	2.0	20	90	5	62	58	5	0	35	1.20
43422--43494	22	3.5	20	78	14	67	57	4	2	35	1.32
44505--44537	16	2.0	17	88	5	50	63	3	0	33	1.10
44679--44731	23	2.4	22	71	6	54	41	1	3	52	1.30
44734--44765	16	2.0	16	93	0	55	28	0	18	53	1.45
48723--48763	16	2.5	16	84	4	55	51	0	0	48	1.00
48752--48777	11	2.4	11	100	0	52	46	0	0	53	1.00
49583--49659	18	4.4	18	80	9	70	38	0	2	58	1.12
49583--49647	18	3.7	18	89	2	87	35	0	3	61	1.12
49664--49698	15	2.3	16	90	9	56	54	11	5	28	1.59
51366--51858	49	10.1	49	73	15	301	38	20	23	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51330--51816	98	5.0	98	80	4	520	38	19	24	17	1.93
51733--51939	98	2.1	99	82	3	247	40	18	23	17	1.91
51366--51879	148	3.5	147	75	10	397	38	20	23	17	1.93
52872--52995	17	7.4	17	80	6	146	42	0	1	54	1.15
52906--52964	28	2.1	28	84	6	75	37	1	1	59	1.18
52904--52960	11	5.1	11	79	8	53	42	1	1	54	1.21
52900--52960	6	10.7	6	77	10	65	40	1	1	55	1.19
52999--53033	15	2.2	16	90	5	54	57	17	5	20	1.60
54762--54846	30	2.9	30	78	1	91	35	23	4	36	1.76
54800--54994	29	6.7	29	71	15	116	31	25	5	37	1.78
54800--54924	58	2.2	58	82	5	146	31	25	4	38	1.77
54883--54995	59	1.9	59	89	7	176	33	23	6	36	1.80
54887--55052	30	5.7	30	68	23	104	30	23	7	38	1.82
54892--55087	59	3.4	57	79	9	175	29	25	9	35	1.87
56696--56726	6	5.2	6	92	0	53	19	16	48	16	1.81
59940--59985	21	2.3	20	85	7	58	36	10	4	47	1.58
60782--60828	22	2.1	22	84	7	60	53	0	0	46	1.00
69611--69637	3	9.0	3	100	0	54	66	0	33	0	0.92
79813--79878	25	2.5	25	80	7	69	46	4	1	46	1.32
82341--82368	2	14.0	2	100	0	56	50	0	0	50	1.00
85522--85600	39	2.0	39	97	0	149	11	22	3	62	1.45
86616--86641	6	4.3	6	100	0	52	84	0	15	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86863--86903	20	2.0	20	100	0	82	19	12	4	63	1.46
126084--126146	32	2.0	31	84	6	81	26	15	11	46	1.80
127692--127762	30	2.3	31	88	9	101	45	7	15	32	1.73
127706--127775	30	2.4	29	83	9	90	50	7	12	30	1.67
130921--130981	26	2.3	26	83	5	79	39	19	6	34	1.78
135814--135851	17	2.3	17	86	4	51	34	5	7	52	1.53
135786--135878	47	2.0	47	80	4	107	35	4	8	51	1.52
136317--136375	3	19.7	3	100	0	118	66	0	0	33	0.92
136895--136980	45	1.9	44	81	9	102	50	20	1	27	1.56
136902--137028	15	8.1	16	69	19	70	51	20	0	26	1.52
136947--137047	31	3.2	32	73	8	82	52	22	1	22	1.57
139685--139727	17	2.5	17	92	0	68	11	34	11	41	1.78
140272--140300	3	9.7	3	100	0	58	34	0	0	65	0.93
141973--142830	407	2.1	399	87	3	1220	29	15	22	33	1.94
142550--142973	139	3.1	135	78	6	406	29	17	22	30	1.97
142550--143015	136	3.4	137	78	5	462	29	17	22	30	1.97
144290--144624	169	2.0	169	98	0	643	32	14	21	32	1.93
151708--151992	139	2.0	139	85	4	387	36	5	19	37	1.76
172980--173516	159	3.4	159	93	0	921	29	10	20	40	1.85
175527--175596	31	2.3	31	87	0	95	20	14	21	44	1.86
177184--177256	29	2.5	28	76	6	83	58	6	4	30	1.43
177593--177650	17	3.6	16	82	13	66	77	3	1	17	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177593--177672	6	13.2	6	73	12	65	76	2	2	18	1.02
179589--179615	14	1.9	14	100	0	54	51	7	11	29	1.64
179911--179956	16	2.8	16	86	3	56	41	10	4	43	1.59
182623--182653	4	7.8	4	100	0	62	77	0	22	0	0.77
197857--198042	101	1.8	102	83	5	252	30	13	18	37	1.89
200792--200825	13	2.6	13	85	0	50	61	0	0	38	0.96
202051--202125	36	2.1	34	83	9	89	54	25	2	17	1.56
205520--205544	2	12.5	2	100	0	50	52	48	0	0	1.00
209736--209790	7	7.9	7	79	0	56	32	29	21	16	1.95
209735--209792	14	4.1	14	79	0	71	34	27	20	17	1.95
209735--209797	21	3.0	21	83	0	81	34	25	20	19	1.96
213426--213467	22	1.9	22	100	0	84	47	7	2	42	1.43
225487--225569	27	3.1	27	83	0	121	38	19	26	15	1.91
228788--228838	4	12.8	4	91	0	75	43	25	5	25	1.77
230940--230969	11	2.7	11	100	0	60	80	0	20	0	0.72
234536--234773	120	2.0	120	89	1	370	30	16	23	28	1.97
234979--235041	29	2.1	30	85	5	92	57	0	0	42	0.99
235456--235499	6	7.3	6	89	7	63	43	0	56	0	0.99
235456--235493	17	2.2	18	95	4	69	44	0	55	0	0.99
236064--236115	10	5.3	10	74	21	56	53	0	0	46	1.00
236041--236115	29	2.6	29	91	6	125	49	0	0	50	1.00
236074--236116	20	2.0	22	91	8	72	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236065--236122	20	3.0	20	76	20	68	50	1	0	48	1.11
241550--241595	22	2.1	22	88	4	67	15	0	32	52	1.43
251099--251132	17	2.0	17	88	0	50	50	5	14	29	1.67
263341--263369	6	4.8	6	100	0	58	0	34	31	34	1.58
270267--270313	25	2.0	23	84	16	60	23	4	4	68	1.26
275834--275865	2	16.0	2	93	0	55	50	46	3	0	1.17
278971--279024	4	13.5	4	92	0	72	46	24	5	24	1.74
300211--300237	3	9.0	3	100	0	54	33	0	33	33	1.58
302287--302318	6	5.3	6	92	0	55	0	0	78	21	0.76
304369--304418	26	1.9	26	84	8	66	24	2	2	72	1.06
306987--307028	21	2.0	21	95	0	75	40	23	9	26	1.85
307301--307372	35	2.1	35	97	0	135	38	20	5	34	1.76
307840--308013	51	3.4	51	87	0	240	30	22	13	32	1.93
307999--308028	15	2.0	15	100	0	60	33	26	13	26	1.93
307948--308075	66	1.9	66	98	0	247	30	24	14	31	1.94
308958--309001	20	2.1	21	83	4	54	36	6	4	52	1.49
309288--309421	60	2.2	60	85	0	196	39	7	14	38	1.75
310320--310417	53	1.9	51	87	6	144	16	2	23	58	1.49
319721--319784	13	4.7	14	75	11	53	43	0	10	45	1.39
320116--320154	20	2.0	20	85	10	53	48	7	7	35	1.61
329508--329587	4	19.8	4	82	7	54	62	7	5	25	1.42
329728--329758	16	2.0	15	93	6	53	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348751--348785	12	2.9	12	95	0	61	51	28	0	20	1.47
348743--348788	18	2.6	18	85	0	65	50	23	0	26	1.50
354506--354537	10	3.2	10	95	0	55	81	6	0	12	0.87
354509--354538	15	2.0	15	93	0	51	80	10	0	10	0.92
363272--363390	60	2.0	60	86	0	166	15	22	16	45	1.85
370107--370144	4	9.5	4	88	0	58	50	28	0	21	1.49
371137--371183	23	2.1	22	92	4	76	55	2	0	42	1.12
371178--371227	27	1.9	26	84	8	66	48	4	2	46	1.32
371138--371227	23	3.4	27	77	15	73	54	3	1	41	1.24
371679--371744	29	2.3	29	86	5	98	53	19	9	18	1.71

Tables:   1   2