genome.fa.s15039.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015039.1 Kokia drynarioides strain JFW-HI SEQ_130083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  570965

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374671--374747	24	2.8	29	77	22	101	3	38	9	48	1.53
374671--374757	30	3.1	28	76	14	83	5	37	9	47	1.60
374725--375360	39	16.4	39	84	4	689	10	36	6	46	1.65
378263--378290	6	4.7	6	100	0	56	14	0	0	85	0.59
378412--378445	2	17.0	2	87	0	50	44	5	50	0	1.26
378757--378811	28	2.0	27	86	6	76	60	3	0	36	1.15
386319--386373	28	1.9	29	85	10	78	36	5	5	52	1.48
387445--387471	14	1.9	14	100	0	54	7	22	18	51	1.70
389260--389959	358	2.0	354	86	4	994	36	17	15	31	1.91
405250--405765	204	2.6	199	81	7	551	31	24	15	28	1.95
407104--407164	24	2.6	24	97	2	115	60	9	8	21	1.54
420317--420446	60	2.2	61	81	5	158	24	16	12	46	1.82
420664--420717	27	2.0	27	86	13	76	53	9	14	22	1.69
420553--420724	89	1.9	90	83	5	224	47	12	15	24	1.81
420622--420739	31	3.9	32	72	15	106	50	10	15	24	1.75
421060--421134	29	2.7	28	83	6	107	68	2	1	28	1.12
422647--422722	34	2.2	34	95	0	134	50	1	21	27	1.57
423292--423403	59	1.9	59	84	0	152	25	16	10	48	1.78
423292--423394	31	3.4	31	76	12	97	27	16	10	45	1.80
431645--431688	4	11.0	4	80	9	54	72	4	0	22	1.02
436365--436400	19	1.9	19	88	5	56	52	27	2	16	1.57
437238--437265	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445307--445336	16	1.9	16	93	6	53	60	0	13	26	1.34
448678--448807	33	3.9	33	69	15	88	68	18	4	8	1.33
451006--451033	13	2.2	13	100	0	56	71	7	0	21	1.09
461562--461601	20	2.0	20	85	0	53	52	5	0	42	1.23
466777--466805	6	4.8	6	100	0	58	51	0	13	34	1.42
470651--470704	23	2.3	23	87	12	76	12	24	22	40	1.89
470700--470753	23	2.3	23	100	0	108	14	24	24	37	1.93
484260--484342	40	2.1	40	95	0	148	50	14	15	19	1.78
485810--486062	125	2.0	123	90	1	398	27	21	8	42	1.82
486201--486225	4	6.2	4	100	0	50	28	0	48	24	1.52
489313--489391	30	2.7	29	78	5	86	44	17	2	35	1.63
490731--490770	2	20.0	2	100	0	80	50	0	0	50	1.00
493199--493237	16	2.4	16	87	8	53	84	2	12	0	0.72
500665--500694	12	2.5	12	94	0	51	43	0	0	56	0.99
500739--500768	2	15.0	2	100	0	60	50	0	0	50	1.00
500770--500813	21	2.1	21	82	0	52	40	9	2	47	1.48
503533--503591	31	1.9	31	83	13	77	42	11	8	37	1.72
508372--508422	26	1.9	27	88	4	77	39	1	1	56	1.22
508372--508440	26	2.7	25	82	8	68	33	5	1	59	1.30
511621--511843	110	2.0	110	93	1	385	33	21	12	31	1.91
519777--519806	6	5.2	6	96	4	53	33	16	50	0	1.46
519892--519924	3	11.0	3	100	0	66	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520046--520114	30	2.3	30	82	7	77	21	8	18	50	1.74
528654--528704	16	3.2	16	85	0	66	54	1	13	29	1.50
530343--530384	7	6.1	7	88	5	68	0	11	0	88	0.53
530341--530382	20	2.0	20	95	4	75	0	9	0	90	0.45
530915--530986	21	3.4	21	79	11	76	34	12	31	20	1.90
556175--556276	36	2.8	36	93	0	186	10	27	19	42	1.84
556244--556504	45	5.8	45	90	0	378	6	30	19	42	1.77
562283--562322	20	2.0	20	86	13	57	42	12	0	45	1.42
562524--562569	19	2.6	19	86	10	62	50	4	2	43	1.34
562903--562940	13	2.7	14	80	15	51	50	2	0	47	1.15
563353--563391	15	2.5	15	83	4	51	48	0	0	51	1.00
564571--564601	6	5.2	6	100	0	62	32	32	0	35	1.58
565905--565965	30	2.0	31	83	3	79	40	6	22	29	1.79
566543--566601	29	2.0	29	86	3	82	28	5	13	52	1.61
566787--566856	31	2.3	30	85	4	88	44	5	5	44	1.51
567042--567108	26	2.6	26	79	11	75	34	5	2	56	1.39
567991--568060	6	12.2	6	70	19	51	47	0	2	50	1.16
567980--568058	17	4.7	17	85	1	97	45	0	3	50	1.19
568056--568081	13	2.0	13	100	0	52	53	15	7	23	1.67
568091--568169	15	5.3	15	81	6	97	45	29	8	16	1.77
568091--568168	30	2.6	30	89	0	120	46	29	8	15	1.76
568780--568829	19	2.5	21	90	6	77	54	2	2	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569933--570079	23	6.5	22	80	9	86	40	23	22	12	1.89

Tables:   1   2

The End!