genome.fa.s15054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015054.1 Kokia drynarioides strain JFW-HI SEQ_130098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  570327

Tables:   1   2   

This is table  1  of  2  ( 190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4516--4618	50	2.1	50	98	0	197	30	8	28	33	1.87
13727--13842	57	2.0	57	100	0	232	21	20	27	30	1.98
18094--18145	22	2.4	21	81	9	59	55	1	1	40	1.22
22916--22941	4	6.5	4	100	0	52	50	23	0	26	1.50
27938--28352	207	2.0	207	97	0	776	40	20	15	22	1.91
32013--32067	14	3.5	17	73	16	64	54	3	0	41	1.18
32010--32067	31	1.9	31	92	3	100	51	3	0	44	1.18
39395--39460	29	2.2	29	84	10	80	48	13	13	24	1.79
39513--39563	18	2.8	18	74	14	59	56	3	1	37	1.29
39526--39554	6	4.8	6	100	0	58	51	0	0	48	1.00
46224--46274	16	3.4	16	71	15	54	29	9	1	58	1.41
56187--56229	18	2.4	18	84	7	52	44	4	4	46	1.45
56683--56726	22	1.9	24	86	9	65	61	0	2	36	1.09
60515--60564	24	2.1	23	82	14	57	38	0	0	62	0.96
60517--60573	29	2.0	29	92	0	96	40	1	0	57	1.09
71135--71268	66	2.0	66	98	0	259	48	12	19	19	1.80
75084--75214	62	2.1	62	97	0	244	28	22	10	38	1.88
88932--88988	29	2.0	29	96	0	105	40	12	12	35	1.80
90578--90677	4	25.0	4	73	11	71	3	32	0	65	1.08
90599--90678	20	3.9	20	83	9	90	2	35	0	62	1.09
90581--90675	17	5.7	15	73	17	55	3	32	0	64	1.10
90578--90677	15	6.2	17	80	11	88	3	32	0	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93166--93219	25	2.1	26	83	10	67	61	9	0	29	1.27
110363--110405	18	2.4	18	84	7	61	48	0	2	48	1.14
112451--112482	10	3.0	11	90	9	57	53	0	0	46	1.00
115308--115354	20	2.4	19	76	13	51	61	8	2	27	1.36
122317--122341	11	2.3	11	100	0	50	36	32	8	24	1.84
131008--131061	20	2.7	20	80	11	56	59	5	0	35	1.21
140721--140788	19	3.5	19	80	6	57	45	1	1	51	1.19
140782--140838	26	2.1	28	87	6	82	42	0	0	57	0.98
143231--143297	27	2.4	27	80	9	73	29	7	5	56	1.51
155296--155344	25	2.0	25	88	8	73	38	10	6	44	1.63
163434--163463	12	2.5	12	94	0	51	26	20	16	36	1.93
166912--166974	14	4.2	14	72	21	56	65	3	1	30	1.18
178207--178245	19	2.1	19	85	0	51	23	7	28	41	1.82
178220--178259	14	3.1	13	89	7	55	30	12	20	37	1.89
187601--187642	17	2.4	18	80	11	52	66	4	0	28	1.12
189537--189695	54	2.9	54	96	0	282	36	10	16	35	1.84
195140--195172	3	10.7	3	93	6	57	36	0	0	63	0.95
196538--196580	22	2.1	21	83	12	54	39	2	0	58	1.11
200809--200863	23	2.4	23	87	0	74	38	20	30	10	1.87
201271--201324	10	5.7	10	75	18	53	37	1	1	59	1.19
201314--201358	19	2.5	17	86	13	63	22	0	6	71	1.09
201280--201348	28	2.5	28	86	6	88	28	1	5	63	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202368--202392	12	2.1	12	100	0	50	52	16	8	24	1.70
204492--204609	46	2.6	47	82	4	141	14	18	23	43	1.87
204492--204607	23	5.0	23	81	3	117	14	18	24	42	1.88
205675--205710	2	18.0	2	100	0	72	50	0	0	50	1.00
206345--206386	22	1.9	22	90	9	68	47	0	4	47	1.23
206407--206478	38	1.9	37	85	2	99	47	8	0	44	1.33
209585--209614	6	5.0	6	100	0	60	16	0	50	33	1.46
219452--219498	4	11.8	4	100	0	94	51	23	0	25	1.49
224734--224764	15	2.1	15	93	0	53	58	3	6	32	1.40
227030--227083	22	2.5	23	75	22	62	44	0	5	50	1.25
227029--227077	21	2.3	21	80	16	57	42	0	6	51	1.27
228968--229281	78	4.1	78	88	2	454	17	20	22	39	1.92
235483--235925	112	4.0	111	86	3	595	35	21	18	24	1.95
235479--235926	221	2.0	222	86	3	634	35	21	18	23	1.95
235867--235971	36	2.9	36	85	0	138	27	26	20	25	1.99
236047--236127	36	2.2	36	88	0	117	29	19	25	24	1.99
239629--239674	19	2.4	19	79	13	51	26	4	15	54	1.59
245920--245961	2	21.5	2	95	4	77	50	0	0	50	1.00
258246--258331	30	2.9	30	77	3	84	33	15	11	39	1.83
259397--259872	235	2.0	237	93	1	823	28	11	19	40	1.87
271635--271662	3	9.3	3	100	0	56	0	0	64	35	0.94
272507--272556	26	1.9	26	84	8	66	50	0	4	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273919--274004	42	2.0	42	84	4	111	30	25	19	24	1.98
276705--276738	17	1.9	17	88	5	50	67	5	0	26	1.13
278128--278333	104	2.0	104	99	0	403	35	19	13	31	1.90
279208--279242	17	2.2	16	90	10	54	57	0	0	42	0.99
285433--285492	31	1.9	32	83	10	79	41	11	6	40	1.68
286485--286577	41	2.2	41	90	1	141	36	12	8	41	1.74
288250--288279	3	10.0	3	100	0	60	66	0	0	33	0.92
289168--289212	3	15.0	3	100	0	90	66	0	0	33	0.92
289945--289979	2	18.0	2	94	5	63	51	0	0	48	1.00
292097--292121	5	5.0	5	100	0	50	40	0	0	60	0.97
292942--292979	2	19.0	2	100	0	76	50	0	0	50	1.00
299310--299398	39	2.3	39	98	2	169	35	8	30	24	1.86
308596--308745	80	1.9	80	88	0	228	34	26	19	20	1.96
312142--312216	39	1.9	38	83	2	96	38	17	9	34	1.82
313471--313626	62	2.5	60	87	5	224	46	3	8	42	1.50
313471--313644	62	2.9	62	84	5	196	45	4	8	41	1.53
313655--313728	32	2.3	32	83	6	96	50	1	0	48	1.09
313705--313742	19	2.0	19	100	0	76	52	0	0	47	1.00
313680--313807	51	2.5	50	77	15	127	46	1	2	49	1.24
313670--313744	32	2.4	31	77	16	82	46	1	0	52	1.09
313765--313833	21	3.0	23	73	23	56	42	2	2	52	1.31
333729--333796	31	2.3	29	80	11	77	41	8	10	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342592--342640	21	2.3	21	82	6	64	59	6	0	34	1.22
354152--354218	29	2.3	29	84	5	91	62	2	1	32	1.19
354274--354301	3	9.3	3	100	0	56	64	0	0	35	0.94
356185--356210	12	2.2	12	100	0	52	50	26	7	15	1.71
363119--363150	5	6.4	5	100	0	64	81	0	18	0	0.70
375287--375331	19	2.3	20	78	21	51	55	6	35	2	1.38
377992--378465	237	2.0	237	98	0	921	32	22	17	28	1.96
387068--387208	70	2.0	70	100	0	282	39	8	25	26	1.84
387726--387784	21	2.6	24	71	20	63	37	6	40	15	1.74
387734--387773	21	1.9	21	90	10	64	40	10	35	15	1.80
387889--387922	3	11.3	3	93	0	59	32	2	35	29	1.73
387925--387968	18	2.4	18	85	7	54	50	0	45	4	1.22
387937--387977	9	4.6	9	87	0	64	53	0	43	2	1.13
389718--389765	9	5.1	9	80	9	51	39	0	2	58	1.10
389718--389751	9	3.8	9	96	0	59	38	0	0	61	0.96
389718--389765	18	2.5	19	83	6	62	39	0	2	58	1.10
402260--402298	20	2.0	19	85	14	53	46	0	2	51	1.14
417739--417767	1	29.0	1	100	0	58	100	0	0	0	0.00
418163--418187	5	5.0	5	100	0	50	20	60	20	0	1.37
420319--420442	23	5.3	23	78	12	128	43	20	22	12	1.86
420270--420418	69	2.1	69	84	12	191	44	19	22	13	1.85
420319--420442	46	2.6	48	81	9	148	43	20	22	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423450--423506	20	2.9	19	80	17	55	59	0	1	38	1.08
426288--426336	16	3.1	16	79	5	55	63	0	4	32	1.13
435994--436030	15	2.6	14	87	8	56	70	0	0	29	0.88
437354--437394	15	2.9	15	85	7	50	60	7	0	31	1.24
444875--444929	19	2.8	19	73	13	58	58	1	1	38	1.20
445145--445241	39	2.5	38	74	15	90	29	5	3	61	1.33
445219--445275	18	3.2	17	78	14	62	24	1	1	71	1.04
445219--445252	10	3.5	10	88	4	52	26	0	0	73	0.83
445220--445303	35	2.4	36	77	2	89	30	1	2	65	1.13
447643--447676	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2