genome.fa.s15054.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015054.1 Kokia drynarioides strain JFW-HI SEQ_130098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  570327

Tables:   1   2   

This is table  2  of  2  ( 190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457017--457050	17	2.0	17	88	11	52	76	11	11	0	1.02
463762--463858	47	2.1	45	82	3	113	35	13	10	41	1.78
478455--478519	4	16.0	4	78	9	69	67	0	32	0	0.91
478459--478519	17	3.5	17	82	13	79	67	0	32	0	0.91
478455--478519	25	2.6	25	78	2	78	67	0	32	0	0.91
481994--482119	45	2.8	45	87	0	171	20	21	25	32	1.98
484344--484386	21	2.1	21	86	4	61	58	13	2	25	1.48
486583--486711	57	2.3	56	79	14	140	24	11	15	48	1.78
490880--490922	4	10.5	4	90	9	61	53	23	23	0	1.46
491165--491209	16	2.8	16	86	0	63	53	0	17	28	1.44
491405--491538	58	2.3	58	84	6	173	52	1	1	44	1.19
491519--491568	25	2.0	25	84	7	66	50	0	4	46	1.20
497180--497252	32	2.3	32	87	0	101	20	5	24	49	1.70
498168--498237	32	2.2	32	82	5	88	51	2	0	45	1.16
498211--498248	20	1.9	20	88	0	58	52	2	0	44	1.14
498198--498258	28	2.1	29	88	8	90	54	1	0	44	1.10
499379--499460	35	2.2	37	82	18	100	45	3	1	50	1.27
500318--500363	23	2.0	22	87	4	65	47	10	0	41	1.38
501995--502116	31	3.9	31	78	14	144	33	13	13	40	1.83
501980--502110	62	2.1	62	89	0	199	32	11	13	41	1.80
504045--504082	13	3.0	13	84	3	51	28	0	0	71	0.87
504045--504080	12	2.9	12	88	8	54	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506201--506266	24	2.8	24	85	0	87	27	21	24	27	1.99
506203--506299	24	4.0	23	79	11	72	24	18	25	30	1.98
510502--510630	54	2.4	53	79	7	134	68	17	5	7	1.33
510556--510599	12	3.6	12	84	3	52	70	18	4	6	1.27
510485--510593	20	5.1	21	71	19	64	68	19	3	8	1.30
516325--516375	25	2.0	26	88	3	77	66	7	1	23	1.28
516926--516960	6	5.5	6	90	10	52	62	0	0	37	0.95
524848--524889	22	1.9	22	90	0	66	54	4	9	30	1.53
536969--537091	61	2.0	61	100	0	246	17	48	6	26	1.71
537053--537317	63	4.2	62	78	4	239	21	47	3	27	1.68
537098--537340	21	11.6	21	67	7	73	21	46	2	28	1.65
537053--537354	63	4.8	61	76	6	221	21	47	3	27	1.68
537246--537450	105	2.0	105	80	1	232	20	47	4	27	1.69
537436--537507	24	3.0	24	83	0	90	16	52	4	26	1.62
537859--537912	21	2.6	21	81	0	63	25	42	3	27	1.72
537730--537884	63	2.5	63	77	0	157	18	42	7	31	1.77
537875--537954	42	1.9	42	82	5	99	23	41	6	28	1.79
537922--537971	21	2.4	21	86	0	64	24	48	2	26	1.62
537998--538043	21	2.2	21	84	0	56	28	36	2	32	1.69
538080--538232	21	7.3	21	73	2	119	25	42	3	28	1.71
538080--538232	42	3.6	42	78	0	171	25	42	3	28	1.71
538080--538234	84	1.8	84	83	0	202	25	43	3	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538204--538616	63	6.5	63	75	7	316	20	46	5	27	1.73
538255--538308	21	2.4	21	78	9	54	22	44	9	24	1.81
538308--538415	24	4.9	24	68	21	65	19	50	3	25	1.64
538270--538426	21	7.3	21	72	12	95	21	49	3	25	1.66
538585--538657	21	3.5	21	80	0	83	24	45	2	27	1.67
538527--538718	105	1.8	105	82	2	251	22	44	4	27	1.73
538527--538760	105	2.2	105	80	3	247	23	44	4	27	1.73
538690--538767	21	3.7	21	77	6	68	24	41	3	30	1.73
538613--538929	159	2.0	159	82	2	386	23	40	5	30	1.76
538883--538963	21	3.9	21	81	0	108	24	43	1	30	1.62
538873--538962	42	2.1	43	82	10	114	25	43	2	28	1.67
538883--538963	42	1.9	42	87	5	119	24	43	1	30	1.62
539111--539172	21	3.0	21	80	0	79	29	41	3	25	1.71
539161--539231	21	3.4	21	75	7	81	25	46	2	25	1.66
539076--539229	42	3.7	42	77	6	134	26	42	3	27	1.73
539468--539601	63	2.1	63	88	2	198	21	43	3	31	1.70
539650--539886	63	3.8	63	79	5	185	21	45	5	27	1.74
539650--539996	126	2.8	125	77	4	299	21	46	4	27	1.72
539708--539780	21	3.5	22	68	19	57	21	47	5	24	1.72
539689--539996	63	4.9	63	79	3	278	20	46	5	27	1.72
540030--540077	18	2.7	18	76	0	51	27	50	4	18	1.65
540020--540120	44	2.3	43	74	17	102	24	49	2	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544823--544896	37	2.0	38	89	2	114	14	20	8	56	1.63
548857--548913	29	2.0	29	82	6	71	28	7	7	57	1.51
560904--560952	22	2.2	22	88	0	71	40	20	0	38	1.53
565279--565316	19	2.1	19	95	5	69	52	0	2	44	1.14

Tables:   1   2

The End!