genome.fa.s15058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015058.1 Kokia drynarioides strain JFW-HI SEQ_130102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  830620

Tables:   1   2   

This is table  1  of  2  ( 226 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9610--9664	22	2.5	21	80	11	56	38	3	1	56	1.28
27077--27186	35	3.2	34	85	7	134	42	0	2	53	1.21
27109--27186	6	13.5	6	72	17	67	46	1	1	51	1.17
27112--27167	11	4.9	11	82	10	60	39	1	1	57	1.20
27077--27186	52	2.1	52	89	0	166	42	0	2	53	1.21
27077--27186	17	6.4	17	84	7	141	42	0	2	53	1.21
27803--27827	13	1.9	13	100	0	50	20	16	0	64	1.30
29011--29336	29	11.2	29	71	15	151	33	28	4	33	1.79
28994--29302	58	5.3	56	75	13	198	33	28	4	33	1.77
29021--29391	29	12.9	28	70	13	127	32	29	5	32	1.80
28994--29303	145	2.1	145	82	6	360	33	29	4	33	1.77
31823--31986	59	2.8	59	86	2	215	24	17	10	47	1.79
31829--31963	31	4.6	30	69	12	84	25	19	10	44	1.82
32190--32265	31	2.5	31	91	2	118	50	10	11	27	1.72
32139--32327	89	2.1	91	82	5	224	47	14	14	23	1.81
35129--35357	123	1.9	123	92	1	388	27	17	22	32	1.96
36937--37008	31	2.3	31	90	0	108	31	1	15	51	1.52
46939--46964	2	13.0	2	100	0	52	50	0	0	50	1.00
55582--55630	20	2.4	20	82	3	53	59	6	4	30	1.41
55604--55642	21	1.9	21	84	5	53	61	7	2	28	1.37
61480--61643	60	2.8	59	76	10	165	25	14	9	50	1.74
63838--63881	9	4.7	9	82	5	52	65	0	2	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63969--64027	31	1.9	31	93	6	102	27	20	10	42	1.84
64274--64426	31	5.1	30	68	18	104	47	9	18	24	1.78
64249--64426	59	3.0	59	86	4	245	47	8	17	25	1.77
70614--70644	12	2.6	12	100	0	62	12	0	12	74	1.08
72688--72712	3	8.3	3	100	0	50	68	32	0	0	0.90
74941--74997	26	2.2	26	81	6	62	21	12	26	40	1.88
74950--75000	26	2.0	26	92	0	84	15	15	27	41	1.88
101133--101186	28	2.0	28	82	10	67	18	14	11	55	1.68
101171--101206	18	2.1	18	90	10	58	25	22	0	52	1.47
101624--101655	2	16.0	2	100	0	64	50	0	0	50	1.00
102465--102507	7	5.7	7	79	15	50	51	2	0	46	1.13
102471--102504	17	2.0	17	88	0	50	47	2	0	50	1.16
102637--102680	18	2.4	18	88	3	61	31	4	0	63	1.14
113864--113912	20	2.5	20	84	12	66	18	0	12	69	1.19
114324--114352	14	2.0	15	93	6	51	13	10	0	75	1.04
115532--115586	21	2.6	21	78	16	60	27	5	1	65	1.25
116313--116379	31	2.3	27	73	14	62	34	5	16	43	1.72
116916--116973	18	3.2	18	85	4	80	53	5	0	41	1.23
123674--123706	9	3.7	9	84	15	50	30	0	9	60	1.27
131381--131444	28	2.3	26	82	10	74	62	0	1	35	1.05
137851--137934	4	20.8	4	73	20	68	71	1	3	23	1.09
139295--139338	18	2.4	19	84	7	63	4	4	40	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139374--139407	17	1.9	18	88	5	52	17	2	17	61	1.46
140008--140086	10	7.4	11	70	14	58	29	24	1	45	1.61
142450--142487	19	2.0	19	85	10	51	65	2	5	26	1.27
142539--142597	15	4.1	14	72	14	50	47	0	3	49	1.18
142993--143044	21	2.5	21	85	14	65	50	19	0	30	1.48
143782--143813	16	2.0	16	93	0	55	28	12	9	50	1.71
144016--144093	29	2.7	28	82	7	84	65	2	2	29	1.19
144019--144079	29	2.1	29	87	3	86	63	0	3	32	1.10
145299--145332	11	3.1	11	88	12	52	38	2	0	58	1.13
145346--145404	27	2.2	28	79	14	70	35	1	5	57	1.31
150943--150971	2	14.5	2	100	0	58	51	0	0	48	1.00
158830--158922	36	2.6	36	82	3	98	24	38	21	15	1.92
158830--158904	12	6.2	12	80	6	80	22	40	21	16	1.91
163786--163816	3	10.3	3	100	0	62	32	0	0	67	0.91
170637--170710	30	2.5	29	82	4	76	31	6	12	50	1.66
171121--171206	29	2.9	29	80	10	86	44	1	2	52	1.21
173281--173352	19	4.0	17	72	16	56	70	1	4	23	1.12
173299--173369	9	7.6	9	73	19	56	71	2	1	23	1.07
173320--173361	10	4.6	9	80	14	50	73	2	0	23	0.94
173299--173369	28	2.5	28	80	15	83	71	2	1	23	1.07
173321--173369	19	2.7	17	81	12	62	73	2	0	24	0.94
173997--174022	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177724--177810	33	2.5	34	83	9	97	73	1	19	5	1.10
182225--182251	2	13.5	2	100	0	54	48	0	0	51	1.00
182655--182688	9	3.7	9	84	7	50	76	0	0	23	0.79
193601--193645	21	2.0	23	87	8	67	28	0	2	68	1.01
195443--195550	7	16.1	7	89	7	147	0	48	0	51	1.00
197952--198023	33	2.2	33	81	16	80	52	9	5	31	1.57
209909--209956	26	1.9	24	83	8	60	47	0	20	31	1.50
210019--210168	23	6.5	21	73	14	84	11	22	24	42	1.86
212128--212166	19	2.1	19	90	0	60	33	2	0	64	1.08
214894--214948	24	2.3	24	84	6	67	61	1	0	36	1.06
214974--215007	17	1.9	18	88	5	52	35	2	0	61	1.11
216017--216079	18	3.3	19	75	18	60	58	3	1	36	1.23
216027--216085	20	3.0	20	79	18	63	55	3	1	38	1.26
216097--216137	21	2.0	21	90	4	66	58	0	0	41	0.98
219126--219274	67	2.4	59	81	12	167	59	1	1	37	1.14
219240--219274	13	2.8	12	91	4	52	77	0	2	20	0.90
230735--230809	31	2.4	31	77	4	80	32	6	12	49	1.66
272094--272145	23	2.2	24	93	6	90	59	3	3	32	1.33
273995--274040	19	2.4	19	85	7	58	41	0	13	45	1.43
275822--275863	22	2.0	21	90	4	66	66	2	0	30	1.04
276655--276692	17	2.2	17	86	9	51	47	2	2	47	1.30
288636--288671	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293898--293927	9	3.3	9	90	0	51	53	20	0	26	1.46
300655--300679	6	4.2	6	100	0	50	84	0	0	16	0.63
317052--317077	10	2.6	10	100	0	52	57	7	0	34	1.27
317101--317191	24	3.7	24	75	7	76	60	1	2	36	1.16
317112--317191	34	2.4	34	81	8	92	61	1	2	35	1.18
317975--318024	20	2.6	19	81	12	57	42	2	10	46	1.49
319187--319217	16	1.9	16	93	0	53	41	9	0	48	1.36
319695--319738	22	2.0	22	86	0	61	45	15	2	36	1.59
320680--320871	96	2.0	96	84	6	255	38	13	18	30	1.88
321112--321328	29	7.3	30	78	12	202	38	3	23	34	1.73
321112--321325	88	2.4	89	86	6	274	37	3	23	35	1.73
322326--322381	15	3.5	15	75	18	51	41	5	3	50	1.43
323033--323120	17	5.0	17	83	9	106	53	4	0	42	1.21
323033--323091	6	10.0	6	80	10	68	54	1	0	44	1.10
324047--324136	46	1.9	47	88	2	137	42	8	11	37	1.72
329768--329826	30	2.0	30	93	0	100	55	11	5	27	1.56
329984--330009	11	2.4	11	100	0	52	69	15	7	7	1.35
338451--338499	23	2.2	23	88	3	73	10	30	18	40	1.84
339372--339460	46	1.9	47	97	2	171	56	13	5	24	1.59
344144--344190	24	2.0	24	87	8	69	53	2	4	40	1.32
344176--344247	31	2.3	30	76	6	72	54	6	0	38	1.28
344781--344818	8	4.9	8	81	18	53	60	2	0	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345601--345662	24	2.4	24	84	10	70	56	1	0	41	1.09
347469--347539	34	2.1	34	100	0	142	22	19	14	43	1.87
347478--347546	34	2.2	30	85	14	88	18	21	14	44	1.85
355302--355332	2	15.5	2	93	0	53	51	3	0	45	1.17
357480--357543	32	2.1	31	82	11	78	31	3	6	59	1.38
358285--358359	37	2.0	37	100	0	150	34	21	5	38	1.76
370548--370576	2	14.5	2	100	0	58	51	0	0	48	1.00
375585--375611	3	9.0	3	100	0	54	33	0	0	66	0.92
378993--379027	2	17.0	2	94	5	61	48	0	2	48	1.16
380114--380151	12	3.2	12	100	0	76	10	50	7	31	1.66

Tables:   1   2