genome.fa.s15058.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015058.1 Kokia drynarioides strain JFW-HI SEQ_130102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  830620

Tables:   1   2   

This is table  2  of  2  ( 226 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380116--380150	18	1.9	18	88	0	52	5	51	8	34	1.56
388012--388053	22	1.9	22	90	0	66	23	7	9	59	1.53
388077--388102	12	2.2	12	100	0	52	34	0	0	65	0.93
390852--390878	9	3.0	9	100	0	54	55	22	0	22	1.44
395806--395837	4	8.0	4	100	0	64	25	0	50	25	1.50
396650--396694	18	2.3	20	75	21	51	31	2	0	66	1.04
402655--402711	25	2.2	26	90	3	89	31	14	5	49	1.65
407840--407956	42	2.8	42	81	5	148	29	7	18	44	1.78
408107--408189	42	2.0	42	87	0	121	26	7	20	45	1.77
408274--408450	97	1.8	97	88	2	275	20	14	11	53	1.71
413160--413197	19	2.0	20	84	5	51	15	21	0	63	1.31
416853--416896	20	2.1	21	84	12	56	31	2	0	65	1.05
421937--421978	23	2.0	20	86	13	57	66	0	0	33	0.92
421947--421985	15	2.5	15	87	4	51	64	0	2	33	1.08
422668--422712	22	2.0	22	83	8	56	66	4	0	28	1.11
431673--431730	24	2.2	26	79	14	66	17	39	0	43	1.49
439943--440009	33	2.0	33	97	0	125	40	1	5	52	1.35
441100--441146	24	2.0	24	82	0	58	14	27	46	10	1.78
452359--452438	38	2.0	40	83	9	103	15	13	11	60	1.60
462587--462624	14	2.8	14	84	4	51	52	0	0	47	1.00
474243--474291	14	3.4	15	75	8	57	63	0	2	34	1.06
474803--474848	16	2.8	17	74	9	51	78	2	8	10	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475106--475147	20	2.1	20	82	8	50	52	7	0	40	1.29
486380--486413	12	2.9	11	87	12	50	47	0	2	50	1.16
486867--486912	17	2.8	17	76	3	58	30	0	2	67	1.03
487856--487957	13	7.5	13	69	22	50	27	1	2	67	1.15
487894--487948	26	2.1	26	83	6	67	29	1	3	65	1.20
498792--498822	3	10.3	3	100	0	62	32	0	0	67	0.91
502624--502651	5	5.6	5	100	0	56	39	21	17	21	1.93
516013--516075	24	2.6	24	87	0	90	50	9	14	25	1.72
517155--517214	31	2.0	30	87	9	86	48	3	1	46	1.28
519716--519742	14	1.9	14	100	0	54	33	0	0	66	0.92
521447--521494	25	1.9	25	82	0	60	60	4	2	33	1.27
522474--522507	17	2.0	17	94	0	59	29	14	11	44	1.81
523464--523578	33	3.6	31	78	10	124	23	12	11	53	1.70
523464--523578	32	3.6	32	76	12	121	23	12	11	53	1.70
532090--532142	21	2.4	21	81	12	63	41	3	3	50	1.38
548436--548495	25	2.4	25	79	17	72	66	0	0	33	0.92
549669--549703	17	2.1	17	89	10	54	22	0	8	68	1.16
550530--550562	16	2.1	16	94	0	57	78	6	0	15	0.93
557848--557889	17	2.4	18	88	4	68	59	0	0	40	0.97
558163--558208	21	2.2	21	88	7	67	39	0	0	60	0.97
564968--565027	31	2.0	31	86	3	86	40	6	6	46	1.56
572507--572550	15	3.0	15	80	6	54	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573280--573325	23	2.0	23	83	12	58	30	0	2	67	1.03
581383--581417	2	17.5	2	100	0	70	48	0	0	51	1.00
589660--589732	23	3.1	23	82	7	92	10	23	23	42	1.85
589669--589739	25	3.0	25	82	12	96	12	21	22	43	1.86
594601--594662	30	2.1	30	82	8	74	38	1	6	53	1.37
595100--595130	7	4.4	7	100	0	62	45	16	0	38	1.47
596734--596792	29	2.0	29	86	3	82	44	3	6	45	1.47
604429--604647	110	2.0	110	90	1	341	24	22	23	30	1.99
606113--606171	28	2.1	28	84	6	75	45	0	0	54	0.99
606840--606869	12	2.4	13	94	5	53	46	0	53	0	1.00
606909--606985	9	8.2	10	70	24	53	46	0	1	51	1.09
606931--606983	27	2.0	27	92	0	88	45	0	1	52	1.11
607267--607310	23	1.9	23	85	0	61	52	0	4	43	1.22
610432--610459	6	4.7	6	100	0	56	14	14	0	71	1.15
613335--613383	23	2.1	23	84	0	62	51	12	2	34	1.51
647546--647617	26	2.7	27	72	10	69	44	0	1	54	1.08
647521--647646	60	2.1	59	86	4	173	43	1	2	52	1.23
648441--648486	21	2.1	23	88	8	69	28	21	17	32	1.96
658549--658613	25	2.6	24	77	20	71	44	3	3	49	1.33
669855--669911	30	1.9	29	85	3	78	31	3	10	54	1.51
676611--676638	2	14.0	2	100	0	56	0	50	0	50	1.00
691946--692042	48	2.0	47	96	2	176	48	2	25	23	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693573--693658	23	3.8	23	85	1	120	11	20	23	44	1.84
693579--693678	46	2.2	46	85	3	132	12	21	19	48	1.80
694758--694793	19	1.9	18	88	5	54	55	8	0	36	1.30
695204--695234	5	6.0	5	96	3	53	3	58	0	38	1.15
695412--695447	18	2.0	18	100	0	72	33	0	5	61	1.19
698051--698092	23	1.9	23	85	9	61	33	7	4	54	1.49
699912--699944	14	2.4	14	94	0	57	69	6	0	24	1.10
701983--702032	26	1.9	26	84	8	66	26	6	4	64	1.35
703766--703829	29	2.1	31	88	5	96	35	7	14	42	1.74
704367--704423	2	30.0	2	73	16	50	49	3	0	47	1.18
704707--704774	34	2.0	34	97	0	127	39	7	8	44	1.64
704707--704787	34	2.4	34	89	4	110	40	7	8	43	1.63
713535--713589	21	2.6	20	78	18	58	54	5	0	40	1.23
713773--713823	24	2.0	26	81	7	61	43	5	5	45	1.52
728217--728258	21	2.0	21	95	0	75	30	28	21	19	1.97
739194--739236	20	2.2	20	95	0	77	23	4	30	41	1.74
744812--744855	9	4.9	9	80	8	54	20	0	2	77	0.88
756417--756445	7	4.1	7	100	0	58	31	27	0	41	1.56
757045--757081	2	18.5	2	100	0	74	51	0	0	48	1.00
760762--760793	3	10.7	3	100	0	64	65	0	0	34	0.93
761768--761840	31	2.4	30	78	13	85	38	8	9	43	1.67
761982--762062	29	2.7	29	79	9	83	46	14	7	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762476--762542	29	2.3	30	76	2	73	46	1	2	49	1.26
766845--766900	21	2.6	21	70	16	51	44	1	8	44	1.45
784183--784214	17	1.9	16	93	6	55	43	3	0	53	1.16
790589--790613	3	8.3	3	100	0	50	32	0	0	68	0.90
796550--796580	2	15.5	2	93	0	53	51	0	0	48	1.00
796565--796651	38	2.3	38	84	4	104	49	5	4	40	1.47
796808--796837	11	2.6	11	94	5	51	63	3	0	33	1.11
797509--797562	28	1.9	29	85	14	78	51	0	1	46	1.11
802890--802923	6	5.7	6	100	0	68	52	0	47	0	1.00
802884--802925	18	2.3	18	83	0	66	59	0	40	0	0.97
810084--810117	7	4.9	7	100	0	68	14	55	14	14	1.69
811135--811182	15	3.3	15	73	5	53	35	6	2	56	1.36
820978--821277	149	2.0	149	88	1	449	40	16	15	28	1.89
822006--822162	53	3.0	52	87	4	228	40	18	14	26	1.88
824050--824087	14	2.6	15	76	23	53	44	0	2	52	1.14
824683--824724	18	2.3	18	84	8	50	26	0	4	69	1.08
830411--830435	6	4.2	6	100	0	50	0	16	16	68	1.22
830568--830615	25	1.9	25	83	8	62	47	6	20	25	1.73

Tables:   1   2

The End!