genome.fa.s15066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015066.1 Kokia drynarioides strain JFW-HI SEQ_130110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  364676

Tables:   1   2   

This is table  1  of  2  ( 170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3980--4018	16	2.4	17	82	4	53	33	0	2	64	1.08
3968--4036	18	3.9	17	78	17	61	27	1	5	65	1.24
4547--4579	11	2.8	12	81	9	50	15	15	15	54	1.71
4660--4724	23	2.8	23	80	2	85	32	10	16	40	1.84
8574--8603	3	10.0	3	100	0	60	33	0	0	66	0.92
17021--17149	63	2.0	63	82	2	152	37	34	5	23	1.78
17038--17305	63	4.2	64	78	5	197	33	32	8	25	1.86
25349--25392	22	2.0	22	87	12	65	13	4	4	77	1.08
26886--26931	21	2.2	21	92	0	74	34	8	2	54	1.43
34241--34296	27	2.0	29	86	6	80	53	10	1	33	1.46
35618--35680	29	2.2	29	82	5	74	30	11	4	53	1.56
37726--37760	2	17.5	2	100	0	70	48	51	0	0	1.00
48742--48804	27	2.3	27	83	0	72	28	28	23	19	1.98
48852--48895	14	3.1	14	77	6	52	68	11	0	20	1.20
48914--48945	2	16.0	2	93	0	55	53	0	0	46	1.00
52808--52867	31	1.9	31	86	0	84	40	10	1	48	1.47
54264--54327	18	3.4	19	78	10	69	45	1	4	48	1.32
54758--54823	30	2.2	31	83	2	80	40	3	7	48	1.47
56332--56393	31	2.0	31	90	0	97	46	9	8	35	1.66
56639--56690	25	2.1	25	89	7	79	46	5	3	44	1.45
57735--57825	19	5.3	17	71	20	57	63	1	0	35	1.02
62002--62049	24	1.9	24	87	8	69	29	0	6	64	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62060--62121	30	2.1	30	87	6	90	45	1	3	50	1.27
62176--62219	19	2.3	19	80	0	52	25	0	2	72	0.96
62195--62231	17	2.1	18	90	5	58	29	0	0	70	0.88
64672--64779	38	2.8	38	91	2	162	27	8	3	60	1.43
74309--74338	14	2.1	14	93	0	51	90	0	10	0	0.47
82609--82659	17	3.1	16	81	10	66	58	1	0	39	1.09
82908--82939	16	2.0	16	100	0	64	31	25	0	43	1.55
84532--84566	18	1.9	18	94	0	61	80	0	5	14	0.89
85360--85407	21	2.3	21	100	0	96	35	0	8	56	1.30
88259--88286	2	14.0	2	100	0	56	50	0	0	50	1.00
89634--89667	2	17.0	2	100	0	68	50	0	0	50	1.00
91641--91666	6	4.3	6	100	0	52	30	69	0	0	0.89
91829--91866	14	2.6	15	79	8	51	65	0	0	34	0.93
92118--92181	28	2.2	28	83	8	74	59	4	1	34	1.28
97027--97056	8	3.8	8	100	0	60	23	0	0	76	0.78
108302--108329	6	4.7	6	100	0	56	32	0	0	67	0.91
110392--110467	10	7.7	10	75	20	63	61	1	0	36	1.04
110400--110467	21	3.4	20	76	11	68	60	1	0	38	1.06
110875--110912	19	2.1	18	85	9	51	52	10	0	36	1.36
112483--112539	28	2.0	28	83	16	73	42	3	3	50	1.36
115984--116031	22	2.1	22	84	3	60	39	18	8	33	1.81
116809--116866	22	2.7	22	77	17	59	32	25	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118823--119112	85	3.3	88	78	10	274	35	1	22	41	1.61
118999--119120	59	2.1	59	86	7	167	36	3	23	36	1.72
118588--119121	29	18.3	29	73	13	286	33	2	25	38	1.70
121200--121275	16	4.6	16	69	16	57	28	3	5	61	1.35
123964--124036	35	2.1	35	97	0	137	28	20	24	26	1.99
126232--126270	19	2.0	21	85	10	55	35	0	2	61	1.10
127246--127294	3	16.3	3	100	0	98	65	0	0	34	0.93
129662--129718	30	1.9	30	85	0	78	49	3	1	45	1.29
134791--134841	24	2.1	24	96	0	93	56	9	11	21	1.63
136763--136813	24	2.1	24	92	0	84	56	9	9	23	1.61
137868--137918	26	2.0	26	96	0	93	7	17	13	60	1.56
138101--138173	29	2.4	31	82	8	89	45	4	0	50	1.20
141509--141541	15	2.2	15	100	0	66	27	12	15	45	1.81
142172--142213	18	2.3	19	83	4	50	54	0	4	40	1.21
144349--144382	16	2.2	15	89	5	50	70	0	0	29	0.87
144490--144650	8	19.1	8	67	23	55	33	3	3	60	1.28
144490--144547	18	3.1	18	77	7	53	31	3	3	62	1.29
144599--144640	18	2.5	16	84	7	57	30	0	2	66	1.04
144609--144657	24	2.0	24	84	7	64	34	2	2	61	1.19
153997--154040	23	1.9	23	90	0	70	61	4	2	31	1.28
154001--154043	11	3.8	11	80	17	52	65	2	2	30	1.18
154747--154779	16	2.1	16	100	0	66	42	0	12	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154747--154780	15	2.2	16	89	5	52	41	0	14	44	1.45
155391--155512	54	2.3	54	100	0	244	54	13	7	24	1.63
160606--160658	23	2.3	23	80	3	63	83	3	5	7	0.92
160605--160668	21	3.2	18	75	14	56	78	4	7	9	1.09
165801--165838	2	19.0	2	100	0	76	50	0	50	0	1.00
168532--168592	22	2.9	21	81	13	63	73	1	8	16	1.14
189547--189604	25	2.3	24	82	8	62	36	0	1	62	1.06
202132--202169	19	2.0	20	89	5	60	76	0	7	15	1.01
203251--203292	21	2.0	21	100	0	84	38	14	19	28	1.90
204265--204290	2	13.0	2	100	0	52	50	0	0	50	1.00
204838--204865	2	14.0	2	100	0	56	50	50	0	0	1.00
209361--209496	73	1.9	73	83	6	177	24	16	16	41	1.89
214912--214943	6	5.3	6	100	0	64	15	0	34	50	1.45
219392--219601	111	1.9	111	83	2	269	39	14	13	32	1.86
222473--222540	27	2.5	27	85	2	82	38	14	5	41	1.70
222839--222865	5	5.4	5	100	0	54	22	18	18	40	1.91
228384--228429	25	1.9	25	86	8	69	32	4	6	56	1.45
228809--228847	14	2.7	15	80	8	53	25	7	10	56	1.59
232402--232443	17	2.5	17	88	0	57	16	4	0	78	0.91
232402--232445	11	3.9	11	79	5	52	20	4	0	75	0.98
233355--233431	12	6.4	12	71	15	52	79	1	11	7	1.00
233365--233433	25	2.8	24	82	10	77	75	1	14	8	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233355--233439	8	10.5	8	69	15	50	78	2	11	7	1.03
233356--233431	35	2.1	36	80	7	84	78	1	11	7	1.01
237681--237722	17	2.5	17	88	0	57	16	4	0	78	0.91
237681--237724	11	3.9	11	79	5	52	20	4	0	75	0.98
238634--238710	12	6.4	12	71	15	52	79	1	11	7	1.00
238644--238712	25	2.8	24	82	10	77	75	1	14	8	1.11
238634--238718	8	10.5	8	69	15	50	78	2	11	7	1.03
238635--238710	35	2.1	36	80	7	84	78	1	11	7	1.01
239752--239797	25	1.9	25	86	8	69	32	4	6	56	1.45
242380--242404	2	12.5	2	100	0	50	52	0	0	48	1.00
245294--245335	21	1.9	22	85	9	59	30	0	2	66	1.04
245281--245337	28	2.0	27	83	12	71	29	0	1	68	1.00
245476--245517	10	4.4	10	82	11	52	59	0	0	40	0.97
245799--245851	17	3.1	17	80	2	61	66	1	30	1	1.13
247337--247397	22	2.8	22	90	7	90	72	0	11	16	1.13
247363--247392	15	1.9	16	93	6	53	70	0	13	16	1.18
248183--248217	11	3.0	11	88	12	52	62	0	0	37	0.95
248182--248236	19	3.0	18	80	15	51	60	1	0	38	1.08
248443--248487	23	1.9	23	86	4	63	46	6	4	42	1.50
251912--252002	18	4.7	18	75	20	78	2	52	4	40	1.33
252059--252104	18	2.6	18	89	0	74	2	41	15	41	1.59
257531--257725	98	2.0	97	88	1	291	37	16	17	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258003--258246	30	8.2	29	71	12	97	37	3	23	35	1.71
258006--258214	60	3.5	57	73	14	163	38	3	23	33	1.73
258065--258147	31	2.8	28	75	12	85	37	3	26	32	1.74
258118--258285	29	5.6	29	76	12	126	41	2	21	34	1.68
258001--258208	59	3.5	55	74	14	152	37	3	24	33	1.74
258138--258307	60	2.8	60	77	6	175	37	2	22	37	1.69
260049--260148	6	17.3	6	71	19	61	55	3	1	41	1.22
260050--260099	23	2.2	23	85	7	66	48	2	2	48	1.24
260070--260148	17	4.6	17	82	6	97	56	3	0	39	1.17
271219--271312	44	2.1	46	86	4	129	34	4	24	37	1.75

Tables:   1   2