genome.fa.s15079.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015079.1 Kokia drynarioides strain JFW-HI SEQ_130123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  413849

Tables:   1   2   

This is table  2  of  2  ( 224 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197407--197450	11	3.7	11	85	14	61	31	2	0	65	1.05
197561--197594	17	1.9	18	88	5	52	61	5	0	32	1.20
198272--198751	61	7.9	61	77	7	372	39	13	15	31	1.86
212996--213024	6	4.8	6	100	0	58	13	17	51	17	1.76
217217--217241	11	2.3	11	100	0	50	68	0	8	24	1.16
217881--217915	10	3.4	10	88	4	52	71	0	2	25	1.00
218467--218548	23	3.5	23	80	5	85	42	15	9	31	1.80
219782--219806	5	5.0	5	100	0	50	0	0	40	60	0.97
221423--221616	100	1.9	100	93	0	334	36	14	22	26	1.93
222271--222332	29	2.3	27	91	8	99	25	16	1	56	1.49
222271--222371	29	3.2	29	75	20	96	26	13	2	56	1.52
225081--225197	42	2.7	42	80	16	114	27	22	8	41	1.82
226264--226311	21	2.2	21	81	3	60	29	25	2	43	1.66
226347--226376	3	10.0	3	92	0	51	0	33	3	63	1.11
228899--228924	3	8.7	3	100	0	52	30	0	0	69	0.89
230498--230541	20	2.3	20	84	7	56	47	4	2	45	1.35
233422--233461	21	2.0	20	85	14	55	60	5	2	32	1.32
236148--236253	35	3.0	35	100	0	212	34	14	25	25	1.93
240016--240045	3	10.0	3	100	0	60	33	0	0	66	0.92
240573--240614	21	2.0	21	86	4	59	4	16	0	78	0.91
240716--240749	18	1.9	18	88	5	52	8	8	2	79	1.03
243035--243873	420	2.0	417	96	0	1534	33	11	14	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244897--244951	16	3.2	16	71	14	56	52	9	5	32	1.56
244894--244961	19	3.7	19	66	18	54	48	7	7	36	1.59
245680--245724	22	2.0	22	83	8	56	48	0	0	51	1.00
245894--245918	2	12.5	2	100	0	50	52	0	0	48	1.00
255720--255815	44	2.2	44	98	0	183	37	14	12	35	1.84
259021--259097	8	8.6	9	70	18	54	64	1	2	31	1.15
259541--259832	19	15.4	19	70	17	67	32	3	3	60	1.30
259590--259766	10	18.2	10	71	13	86	33	2	3	61	1.25
259590--259835	9	26.1	9	71	16	153	32	2	2	61	1.23
259531--259843	20	15.9	19	69	13	107	31	2	3	61	1.29
259576--259644	29	2.3	30	80	14	81	31	1	4	62	1.24
259600--259775	67	2.6	67	79	13	191	32	2	3	60	1.28
267316--267362	24	1.9	25	82	4	60	19	6	27	46	1.74
270408--270436	15	2.0	15	93	6	51	24	34	13	27	1.93
277740--277841	23	4.3	23	80	7	100	12	20	20	46	1.83
277740--277869	23	5.5	23	74	11	93	12	22	20	45	1.84
278993--279054	32	1.9	32	83	9	81	41	6	1	50	1.38
279084--279127	21	2.0	23	86	13	65	43	13	2	40	1.57
285821--285852	4	8.0	4	92	0	55	71	0	28	0	0.86
287411--287450	21	1.9	21	84	0	53	32	15	20	32	1.93
300286--300318	15	2.2	15	89	10	50	45	15	0	39	1.46
310691--310736	17	2.7	17	89	0	74	39	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311376--311446	3	23.7	3	100	0	142	67	0	0	32	0.91
312536--312914	29	12.8	29	69	13	177	34	22	3	39	1.72
312556--312854	59	5.0	58	81	6	289	33	22	3	41	1.70
312574--312854	118	2.4	116	85	5	357	33	21	3	41	1.69
312823--312971	59	2.5	58	82	6	183	35	26	4	34	1.75
312842--313030	59	3.2	59	80	7	172	34	24	6	33	1.81
315104--315167	33	2.0	33	84	3	85	45	4	4	45	1.45
319991--320138	79	1.9	78	87	1	215	31	25	20	22	1.98
319813--320169	181	2.0	185	83	3	463	31	25	20	22	1.98
325376--325419	22	2.0	22	82	8	54	38	22	15	22	1.92
327475--327546	28	2.6	28	84	6	92	38	29	9	22	1.86
330861--330903	20	2.1	21	86	4	61	48	2	39	9	1.48
336382--336410	3	9.7	3	100	0	58	65	0	0	34	0.93
337527--337561	3	11.7	3	100	0	70	68	0	0	31	0.90
344095--344174	17	4.6	17	80	3	97	53	3	1	41	1.27
348287--348319	16	2.1	16	88	5	50	6	9	18	66	1.40
354116--354227	57	2.0	57	98	0	215	40	13	8	37	1.76
354120--354210	29	3.2	29	66	25	84	39	9	8	41	1.69
356134--356320	29	6.4	29	69	15	109	41	9	20	28	1.83
356230--356527	29	10.2	29	69	17	161	34	5	24	35	1.78
356095--356438	58	5.9	58	78	10	260	36	6	22	33	1.81
356189--356525	58	5.8	56	78	10	261	35	5	23	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356230--356527	30	10.2	29	69	13	173	34	5	24	35	1.78
356278--356527	30	8.5	30	73	11	187	34	4	24	36	1.76
358376--358426	17	3.0	17	91	0	84	56	1	0	41	1.10
363694--363753	24	2.5	23	81	10	66	58	0	1	40	1.08
363742--363820	31	2.5	31	83	0	104	54	1	3	40	1.26
363760--363850	10	9.4	10	73	20	61	47	2	2	48	1.26
364859--364900	17	2.4	17	88	4	57	47	2	28	21	1.63
364873--364920	24	2.0	24	84	8	62	45	2	33	18	1.61
366641--366748	23	4.5	22	80	11	74	43	23	23	10	1.84
366666--366769	23	4.4	23	84	7	129	45	23	22	9	1.81
366666--366769	48	2.2	46	83	6	138	45	23	22	9	1.81
371301--371346	23	2.0	23	95	0	83	30	4	15	50	1.63
372713--372760	2	24.0	2	100	0	96	50	0	0	50	1.00
373460--374009	158	3.5	155	82	6	668	31	22	17	28	1.96
373580--374009	154	2.8	151	83	5	530	32	21	16	29	1.95
375759--375819	18	3.4	17	77	8	68	26	36	8	29	1.85
380082--380166	29	3.0	29	78	14	104	43	5	15	35	1.71
380654--380719	29	2.2	30	84	10	82	21	6	12	60	1.53
383799--383902	55	1.9	55	97	0	199	50	9	11	28	1.70
385544--385572	7	4.1	7	100	0	58	41	0	41	17	1.49
386438--386742	153	2.0	153	98	0	583	32	13	16	37	1.87
386753--386807	19	2.8	20	76	15	60	58	7	1	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388826--388871	15	3.1	15	76	17	60	54	8	8	28	1.61
397534--397586	20	2.7	20	79	5	63	32	3	7	56	1.45
400541--400585	20	2.3	20	85	14	60	53	0	6	40	1.27
400869--400910	22	2.0	22	85	4	59	42	0	16	40	1.48
406519--406594	21	3.6	21	75	7	64	31	17	15	35	1.91
409274--409335	31	2.0	31	84	12	83	48	1	3	46	1.28
410470--410798	168	1.9	169	87	4	486	36	19	21	22	1.95
410811--411325	167	3.0	169	84	5	590	36	18	21	24	1.95
410470--411184	375	1.9	375	93	0	1225	36	18	22	22	1.95
410853--411377	179	3.0	176	83	6	590	35	19	21	23	1.96
411995--412085	6	15.7	6	72	15	66	41	2	3	52	1.30
411966--412100	17	7.5	17	71	12	81	38	3	5	52	1.42
411995--412051	23	2.5	23	88	0	87	40	1	3	54	1.28
412001--412040	11	3.5	11	80	6	53	37	0	5	57	1.21
412020--412085	34	1.9	35	90	3	107	43	3	3	50	1.33
412026--412100	35	2.2	34	80	7	80	45	5	1	48	1.33

Tables:   1   2

The End!