genome.fa.s15082.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015082.1 Kokia drynarioides strain JFW-HI SEQ_130126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  435845

Tables:   1   2   

This is table  1  of  2  ( 139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2767--3266	248	2.0	247	96	2	923	24	12	20	42	1.86
4135--4263	64	2.0	64	100	0	258	17	16	23	43	1.87
27017--27093	34	2.4	33	86	6	104	46	10	18	24	1.80
27614--27682	33	2.1	33	100	0	138	39	11	8	40	1.72
34411--34462	16	3.2	16	84	12	70	65	0	0	34	0.93
35025--35066	22	1.9	22	90	0	66	42	0	7	50	1.30
38992--39058	31	2.2	31	97	2	127	23	13	25	37	1.92
39839--39866	2	14.0	2	100	0	56	0	50	0	50	1.00
51262--51294	16	1.9	18	88	11	52	54	6	12	27	1.60
59549--59588	19	2.1	19	100	0	80	40	32	5	22	1.76
63187--63282	48	2.0	48	95	0	174	25	8	6	60	1.49
82877--82943	33	2.0	33	94	0	116	44	14	14	25	1.84
96374--96423	25	2.0	25	92	3	84	30	0	4	66	1.10
96726--96772	21	2.2	21	85	7	60	44	2	0	53	1.12
103666--103710	23	2.0	23	86	8	65	28	2	8	60	1.39
109132--109187	27	2.1	27	93	0	94	28	14	14	42	1.84
112510--112550	22	1.9	22	85	5	57	31	7	0	60	1.24
113183--113233	19	2.6	19	81	9	59	49	19	0	31	1.49
114540--114605	32	2.1	32	91	0	105	43	13	15	27	1.84
116272--116326	24	2.2	25	87	3	76	43	1	0	54	1.10
116473--116531	30	2.0	30	86	0	82	35	16	11	35	1.86
146593--146658	31	2.1	31	94	0	114	53	12	1	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150868--150955	44	2.0	44	100	0	176	31	6	31	29	1.84
154190--154225	2	18.0	2	88	0	54	50	0	5	44	1.25
167734--167767	15	2.3	15	100	0	68	23	8	26	41	1.83
168340--168376	6	6.2	6	87	0	56	24	0	0	75	0.80
169172--169282	57	1.9	57	87	0	159	22	21	18	37	1.94
172595--172818	23	9.9	23	74	13	169	42	20	23	12	1.87
183731--183785	21	2.7	21	81	18	71	63	1	0	34	1.05
183751--183801	9	5.3	10	74	25	56	58	0	0	41	0.98
185131--185167	6	6.2	6	93	6	58	83	13	0	2	0.74
186036--186076	14	3.1	13	86	13	57	36	2	2	58	1.24
209098--209137	2	19.5	2	89	5	62	50	5	0	45	1.23
209684--209709	6	4.3	6	100	0	52	50	0	0	50	1.00
236553--236592	20	2.0	21	85	5	55	42	5	22	30	1.75
236691--236745	20	2.8	20	85	0	65	36	9	9	45	1.68
239733--239783	6	8.5	6	91	0	84	19	33	0	47	1.50
241319--241564	122	2.0	122	99	0	483	30	21	4	44	1.72
243705--243745	12	3.5	12	83	6	57	29	0	0	70	0.87
243716--243798	33	2.5	32	90	3	112	37	0	1	61	1.04
243749--243815	25	2.8	24	76	10	66	38	0	1	59	1.06
243782--243844	15	4.1	15	76	15	74	44	0	1	53	1.10
244372--244737	43	8.3	43	79	11	341	30	27	16	26	1.96
244422--244525	54	1.9	54	92	0	172	30	26	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244476--244665	85	2.2	86	89	2	285	30	25	16	27	1.97
244659--244753	43	2.2	43	79	7	104	33	23	9	33	1.87
254832--254869	18	2.1	18	100	0	76	15	15	5	63	1.48
257630--257759	21	6.2	21	80	1	127	16	41	15	26	1.88
257656--257795	42	3.3	42	87	2	174	18	40	15	25	1.90
257640--257776	63	2.2	64	82	2	161	18	40	13	27	1.89
257842--257972	21	6.2	21	77	3	111	27	38	9	25	1.86
257845--257966	42	2.9	42	81	4	156	27	37	9	24	1.87
257842--257972	63	2.1	63	82	2	156	27	38	9	25	1.86
257941--258029	21	4.2	21	81	2	90	28	43	8	19	1.80
257941--258140	42	4.8	42	78	4	154	25	45	7	22	1.77
257996--258131	21	6.5	21	76	3	103	25	46	5	22	1.74
258082--258137	21	2.7	21	80	0	67	25	44	7	23	1.78
258001--258161	84	1.9	84	81	0	196	23	46	8	21	1.78
261109--261165	29	1.9	30	85	3	80	50	0	21	28	1.48
271843--271867	4	6.2	4	100	0	50	24	0	24	52	1.48
275814--275858	7	6.4	7	97	0	72	28	33	0	37	1.58
277827--277931	55	1.9	56	92	2	176	41	9	7	40	1.66
280500--280551	26	2.0	26	84	0	68	15	17	9	57	1.64
286635--286731	49	2.0	49	95	2	178	27	4	14	52	1.59
287881--287922	21	2.0	21	81	9	50	21	2	16	59	1.48
302157--302186	15	1.9	16	93	6	53	43	6	13	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304878--305199	165	1.9	167	94	2	569	29	16	16	37	1.91
309050--309100	27	2.0	25	100	0	84	37	9	21	31	1.86
309248--309286	20	2.0	20	94	0	69	25	7	5	61	1.44
312842--312885	21	2.1	21	87	8	63	52	0	25	22	1.48
320639--320700	30	2.1	30	90	6	99	51	1	0	46	1.10
320681--320724	19	2.3	19	81	11	54	65	2	0	31	1.05
320991--321018	13	2.2	13	100	0	56	21	0	14	64	1.29
323051--323085	14	2.4	14	90	4	52	77	2	0	20	0.90
323050--323151	25	3.7	28	77	13	88	66	3	0	29	1.09
326596--326638	11	3.8	11	80	17	52	65	2	2	30	1.18
326984--327030	3	15.7	3	100	0	94	31	0	0	68	0.90
352663--352808	59	2.5	58	78	6	159	23	14	12	50	1.76
354674--354840	61	2.8	58	84	11	216	25	18	11	44	1.83
355015--355143	31	4.2	30	74	13	109	45	13	19	21	1.84
357953--358023	29	2.3	30	86	11	92	47	0	0	52	1.00
357970--358021	15	3.5	15	72	12	54	53	0	0	46	1.00
358975--359138	84	2.0	84	83	1	213	47	13	6	32	1.69
366881--366922	17	2.5	17	78	14	52	33	0	2	64	1.07
367903--368076	58	2.9	58	75	10	165	47	10	16	25	1.79
369111--369227	57	2.1	56	96	1	216	30	15	5	48	1.66
369697--369721	5	5.0	5	100	0	50	40	0	0	60	0.97
371475--371499	13	1.9	13	100	0	50	72	8	16	4	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372609--372692	39	2.2	38	81	10	91	34	8	2	54	1.43
372687--372736	21	2.5	20	81	12	57	34	10	2	54	1.45
373758--373787	2	15.0	2	100	0	60	50	0	0	50	1.00
376312--376361	26	1.9	26	88	8	75	48	0	0	52	1.00
376337--376371	18	1.9	18	88	0	52	45	0	0	54	0.99
376318--376376	21	2.8	20	79	10	64	49	0	0	50	1.00
378446--378505	26	2.3	25	80	11	59	61	1	0	36	1.06
378465--378509	16	2.8	17	74	19	51	62	0	0	37	0.96
378463--378537	37	2.1	35	82	9	89	60	0	0	40	0.97
380382--380419	18	2.0	20	85	10	53	76	15	0	7	1.01
380642--380760	58	2.1	58	90	3	186	34	0	17	47	1.48
380977--381021	23	2.0	23	86	0	63	35	20	13	31	1.91
382133--382187	27	2.0	27	96	0	101	23	14	14	47	1.81
386882--386911	15	2.0	15	93	0	51	43	0	0	56	0.99
392864--392940	28	2.8	28	78	7	84	28	20	23	27	1.99
392906--392973	29	2.5	26	81	9	73	27	22	25	25	1.99
392906--393062	26	5.9	26	78	8	111	27	21	22	28	1.99
392961--393060	26	3.8	27	86	4	132	26	21	24	29	1.99
399464--399536	28	2.6	29	78	6	87	35	16	16	31	1.91
399552--399688	26	5.2	24	78	12	67	23	20	22	33	1.97
399572--399709	27	5.2	27	89	0	181	23	18	25	33	1.97
400071--400117	17	2.7	17	77	9	51	27	2	25	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403706--403739	14	2.3	15	85	5	52	50	20	8	20	1.75
405224--405575	89	4.0	86	75	11	282	36	21	1	39	1.65
405224--405575	60	6.0	58	74	10	295	36	21	1	39	1.65
405255--405535	117	2.4	118	78	8	281	36	20	2	40	1.65
405246--405599	30	12.1	29	75	14	223	36	22	1	39	1.64
413023--413193	49	3.5	49	94	0	288	37	14	24	23	1.92
413121--413529	210	1.9	209	85	2	561	36	17	22	23	1.95
413454--413577	49	2.6	49	83	6	137	37	14	20	26	1.92
413454--413577	48	2.6	47	83	6	133	37	14	20	26	1.92
413331--413747	173	2.4	172	85	3	561	36	16	22	24	1.94

Tables:   1   2