genome.fa.s15093.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015093.1 Kokia drynarioides strain JFW-HI SEQ_130137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  636787

Tables:   1   2   

This is table  2  of  2  ( 208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381216--381246	15	2.1	15	100	0	62	32	19	22	25	1.97
381833--381876	20	2.3	19	80	4	52	43	4	2	50	1.35
383061--383136	32	2.3	33	84	13	104	63	6	5	25	1.40
393750--393806	14	3.9	14	73	26	55	63	3	7	26	1.36
393736--393809	30	2.3	32	82	17	93	63	4	5	27	1.34
395079--395168	40	2.2	41	94	2	155	36	2	8	52	1.45
395788--395835	23	2.0	25	84	8	64	20	14	6	58	1.58
396565--396615	23	2.3	23	80	6	61	56	1	1	39	1.22
396603--396632	16	1.9	16	93	6	53	70	0	0	30	0.88
405459--405626	92	1.8	91	92	2	284	42	9	17	30	1.81
405729--405799	31	2.4	27	78	17	79	33	1	2	61	1.19
410224--410433	105	2.0	105	95	1	377	42	8	10	38	1.71
410548--410608	31	2.0	31	93	0	104	37	1	6	54	1.37
412969--413016	19	2.6	18	75	15	53	37	0	0	62	0.95
413255--413280	8	3.2	8	100	0	52	88	0	11	0	0.52
417076--417152	39	2.0	39	84	5	102	40	9	23	27	1.84
424986--425205	109	2.0	109	96	0	404	45	10	15	29	1.79
430441--430548	9	11.3	9	71	13	56	38	3	0	56	1.23
430477--430518	10	4.3	10	81	3	50	38	4	0	57	1.20
430463--430516	19	2.8	19	81	10	65	40	3	1	53	1.29
430477--430549	20	3.7	20	80	8	78	39	4	0	56	1.19
442429--442457	4	7.2	4	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444580--444623	21	2.0	22	86	4	63	40	13	13	31	1.84
456512--456694	91	2.0	91	95	0	330	31	24	15	28	1.96
458734--459415	367	1.9	365	83	5	901	27	12	20	40	1.87
469246--469522	136	2.0	137	86	6	384	45	5	7	41	1.57
473728--473817	40	2.3	39	85	11	114	52	1	3	43	1.25
473751--473811	20	3.0	20	71	17	63	52	0	1	45	1.10
474713--474787	29	2.6	28	79	8	89	48	4	0	48	1.20
479532--479619	20	4.4	18	69	18	59	52	0	2	45	1.13
479542--479624	40	2.1	38	91	4	130	55	0	1	43	1.07
479544--479608	13	4.9	13	70	17	53	52	0	1	46	1.10
482300--482340	17	2.3	19	80	20	52	43	7	0	48	1.30
483081--483165	42	2.0	42	90	0	134	25	22	18	32	1.97
485207--485231	3	8.3	3	100	0	50	32	0	0	68	0.90
492400--492464	32	2.0	32	82	5	78	44	20	3	32	1.67
508457--508489	14	2.4	14	94	0	57	63	12	6	18	1.48
512417--512449	12	2.8	12	90	4	50	54	0	12	33	1.37
512649--512680	17	1.9	17	93	6	57	40	0	0	59	0.97
513138--513210	29	2.4	30	80	15	80	36	6	8	47	1.60
515403--515443	16	2.5	18	81	18	54	63	7	2	26	1.33
515403--515437	19	1.9	17	88	11	52	68	5	2	22	1.24
516492--516563	30	2.5	28	81	4	81	36	9	25	29	1.88
516579--516682	28	3.7	27	76	15	97	35	4	28	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516603--517043	30	14.9	29	66	19	107	38	3	25	32	1.73
516752--517067	59	5.3	59	81	11	312	37	2	25	33	1.70
516758--517043	30	9.6	29	69	11	161	39	2	24	33	1.69
516966--517123	29	5.5	28	69	10	95	39	2	24	34	1.69
516752--517123	118	3.2	117	79	10	379	38	2	25	33	1.71
518141--518205	3	21.3	3	80	3	76	36	1	1	60	1.16
518919--518988	17	4.1	17	81	9	61	52	1	1	44	1.18
518932--518997	11	5.9	11	75	8	53	54	1	1	42	1.18
518932--518988	6	9.8	6	74	14	57	54	0	1	43	1.10
518932--518988	17	3.3	17	87	2	78	54	0	1	43	1.10
518920--518997	28	2.5	31	80	13	90	53	2	1	42	1.22
523210--523335	66	1.9	66	91	0	207	36	11	23	28	1.89
526715--526741	13	2.1	13	100	0	54	85	0	0	14	0.61
526953--526983	6	5.2	6	100	0	62	16	67	0	16	1.23
527222--527247	2	13.0	2	100	0	52	50	0	0	50	1.00
529234--529307	30	2.5	30	82	2	78	59	2	2	35	1.26
532976--533024	20	2.4	21	86	3	64	28	2	12	57	1.46
533522--533554	4	8.2	4	93	0	57	27	0	0	72	0.85
553275--553638	175	2.1	175	83	8	447	37	3	23	35	1.71
553275--553679	30	13.9	29	76	9	304	38	2	22	35	1.70
555672--555776	55	1.9	55	86	3	149	34	7	22	35	1.83
558720--558901	91	2.0	91	100	0	364	35	15	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563130--563174	24	2.0	24	86	8	67	55	2	0	42	1.12
572523--572562	20	2.0	21	90	5	64	37	0	2	60	1.11
573401--573468	24	2.8	24	84	4	75	26	11	8	52	1.67
588976--589023	14	3.2	15	78	18	55	56	0	0	43	0.99
589391--589430	16	2.6	14	88	11	53	70	0	2	27	1.01
589391--589430	7	5.3	7	85	14	53	70	0	2	27	1.01
589570--589610	15	2.5	17	84	11	50	51	4	2	41	1.36
593971--594002	11	2.8	12	86	13	50	68	0	0	31	0.90
594745--594771	6	4.5	6	100	0	54	37	0	0	62	0.95
595895--595927	17	2.1	17	88	11	52	54	6	0	39	1.25
598085--598123	12	3.2	12	96	0	69	69	0	30	0	0.89
602120--602174	27	2.0	28	92	3	94	56	18	9	16	1.66
602931--602994	27	2.3	27	86	2	83	56	20	9	14	1.65
603738--603781	22	2.0	22	90	0	70	47	18	9	25	1.77
604933--604970	18	2.1	18	85	9	51	68	0	28	2	1.03
607687--607754	30	2.3	30	97	0	127	30	2	41	25	1.70
610745--610770	3	8.7	3	100	0	52	69	0	30	0	0.89
625965--626072	31	3.5	30	71	12	85	29	18	15	36	1.92
626506--626572	24	2.8	24	83	0	80	55	7	7	29	1.55
628456--628517	24	2.5	25	78	2	72	50	6	11	32	1.64
628458--628517	25	2.5	24	77	2	66	50	6	10	33	1.62
632295--632339	22	2.0	22	83	8	56	44	6	0	48	1.29

Tables:   1   2

The End!