genome.fa.s15150.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015150.1 Kokia drynarioides strain JFW-HI SEQ_130194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  411378

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274900--274956	28	2.0	29	93	3	98	54	0	12	33	1.38
276033--276087	3	18.3	3	100	0	110	32	34	0	32	1.58
277840--277884	21	2.1	21	91	0	72	53	13	6	26	1.64
283043--283095	27	1.9	28	92	3	90	20	41	0	37	1.53
283825--283862	19	2.0	19	94	0	67	36	13	18	31	1.89
287495--287549	24	2.3	24	87	0	74	52	10	10	25	1.69
287505--287555	24	2.1	24	96	0	93	58	7	9	23	1.56
298559--298587	14	2.0	15	93	6	51	62	6	17	13	1.52
301939--301988	25	2.0	25	92	0	82	50	2	2	46	1.24
302686--302728	16	2.8	16	82	3	52	20	0	4	74	1.00
305032--305115	42	2.0	42	95	0	150	41	20	13	25	1.88
307360--307409	18	2.8	18	85	11	75	42	12	12	34	1.79
307843--308072	72	3.2	72	89	0	370	23	5	14	55	1.61
309950--309975	12	2.2	12	100	0	52	61	7	23	7	1.49
310350--310400	25	2.0	25	81	7	59	45	3	5	45	1.46
312495--312544	15	3.3	15	76	17	59	56	2	0	42	1.11
322015--322040	12	2.2	12	100	0	52	15	15	30	38	1.88
326703--326785	26	3.2	26	65	21	75	25	8	34	31	1.86
326689--326791	51	2.0	51	100	0	206	25	7	37	29	1.84
328880--328927	13	3.7	12	79	17	51	62	0	8	29	1.24
330068--330099	15	2.1	15	94	0	55	50	0	15	34	1.45
330069--330106	15	2.7	14	84	8	51	44	0	15	39	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330258--330303	20	2.2	20	84	3	56	63	0	6	30	1.20
330655--330698	21	2.0	21	87	12	63	68	2	0	29	1.02
332732--332829	23	4.2	22	73	12	79	11	25	20	42	1.85
336704--336766	31	2.0	31	87	0	90	39	6	7	46	1.59
337214--337418	102	2.0	102	90	1	322	33	17	8	40	1.80
337979--338036	28	2.1	28	100	0	116	36	17	3	43	1.66
338336--338383	19	2.6	19	83	6	64	54	12	4	29	1.56
340029--340358	165	2.0	165	89	1	509	33	20	20	26	1.97
344888--345094	80	2.6	80	87	1	299	30	26	18	24	1.98
346756--346853	49	2.0	49	95	0	178	48	2	5	43	1.36
362159--362238	23	3.4	23	82	5	90	38	17	12	31	1.87
362384--362420	18	2.1	18	100	0	74	5	18	21	54	1.64
363517--363579	31	2.0	31	100	0	126	39	12	25	22	1.89
370711--370769	28	2.1	28	81	12	68	55	6	0	37	1.26
371730--371788	30	1.9	31	86	10	86	38	0	1	59	1.08
371745--371811	30	2.2	30	81	7	73	38	1	4	55	1.29
372200--372225	2	13.0	2	100	0	52	50	0	0	50	1.00
376508--376712	101	2.0	101	100	0	410	29	12	16	41	1.85
386304--386354	25	2.0	25	81	7	59	45	3	5	45	1.46
393900--393938	21	1.9	21	89	5	62	12	12	7	66	1.43
402797--402894	50	2.0	50	91	0	160	41	19	19	19	1.90
403078--403218	50	2.8	50	88	2	194	33	19	25	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403078--403269	50	3.8	50	81	2	188	34	17	25	22	1.96
403373--403611	101	2.4	101	81	2	275	33	19	20	27	1.96
403373--403553	51	3.6	49	72	14	145	33	19	20	27	1.96
406085--406131	24	2.0	24	87	8	69	29	2	0	68	1.02
407174--407228	26	2.1	26	96	0	101	41	3	10	43	1.57
409606--409711	2	51.5	2	77	5	104	42	4	6	46	1.51
409606--409687	15	5.8	15	84	12	104	42	4	6	46	1.50
410840--410874	16	2.2	16	89	0	52	60	14	8	17	1.58

Tables:   1   2

The End!