genome.fa.s15179.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015179.1 Kokia drynarioides strain JFW-HI SEQ_130223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  658618

Tables:   1   2   

This is table  2  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404338--404550	24	8.9	24	91	2	295	22	21	28	27	1.99
404338--404539	95	2.1	96	88	0	307	21	22	28	27	1.99
406859--406902	19	2.4	19	81	14	56	34	0	4	61	1.16
407587--407619	17	1.9	17	93	0	57	30	0	0	69	0.88
408188--408248	10	5.8	10	75	9	50	37	1	1	59	1.17
408215--408246	10	3.2	10	100	0	64	34	0	0	65	0.93
408215--408253	20	2.0	20	89	0	60	33	2	0	64	1.08
408397--408451	19	2.6	22	72	8	53	38	3	3	54	1.36
408974--409019	24	1.9	24	90	0	74	26	15	6	52	1.67
416593--416686	26	3.6	26	78	9	86	35	23	14	26	1.94
417104--417137	17	2.0	17	88	11	52	26	0	8	64	1.22
417331--417452	50	2.4	50	80	4	129	35	15	12	36	1.85
419345--419389	17	2.6	17	89	3	63	46	15	20	17	1.84
427036--427278	51	4.8	51	88	2	339	33	12	22	31	1.91
427036--427278	102	2.4	101	91	2	389	33	12	22	31	1.91
428044--428103	21	2.8	22	77	7	70	36	13	21	28	1.91
430877--430932	26	2.2	26	83	0	67	35	16	14	33	1.88
434699--434723	11	2.3	11	100	0	50	8	8	0	84	0.79
434769--434821	3	17.7	3	84	7	72	5	28	0	66	1.15
434820--434882	3	21.0	3	100	0	126	33	0	0	66	0.92
435293--435504	115	1.8	115	85	7	297	44	2	10	42	1.51
437383--437462	21	3.9	21	69	11	58	33	7	13	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437990--438046	30	1.9	29	85	3	78	49	1	19	29	1.58
438365--438402	3	13.0	3	83	5	51	36	0	0	63	0.95
440389--440678	75	3.9	75	82	4	334	32	11	10	45	1.74
452034--452183	49	3.1	48	85	2	192	32	20	20	26	1.97
452032--452183	73	2.1	73	89	0	232	32	21	20	26	1.97
452022--452183	24	6.7	24	82	2	180	30	20	19	29	1.97
456050--456088	19	2.1	19	86	13	55	38	2	2	56	1.27
461717--461794	37	2.1	37	92	0	129	20	12	17	48	1.80
470567--470869	30	10.1	30	78	7	186	38	21	5	34	1.78
470563--470869	60	5.1	59	76	9	248	37	21	6	34	1.78
470563--470869	90	3.4	90	77	8	227	37	21	6	34	1.78
470581--470869	149	1.9	149	81	4	341	38	21	6	33	1.78
474356--474440	26	3.3	25	78	6	89	27	25	16	30	1.97
477200--477312	59	1.9	58	96	1	208	36	4	7	52	1.49
482666--482968	30	10.1	30	78	7	186	38	21	5	34	1.78
482662--482968	60	5.1	59	76	9	248	37	21	6	34	1.78
482662--482968	90	3.4	90	77	8	227	37	21	6	34	1.78
482680--482968	149	1.9	149	81	4	341	38	21	6	33	1.78
486455--486539	26	3.3	25	78	6	89	27	25	16	30	1.97
489298--489657	59	6.1	59	95	0	623	34	5	8	51	1.57
493367--493727	194	1.9	196	85	1	501	27	24	16	31	1.96
502809--502844	10	3.7	10	88	7	56	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503330--503364	17	2.0	18	88	5	54	34	5	0	60	1.21
504518--504548	11	2.7	12	90	10	55	32	0	0	67	0.91
504825--504858	13	2.5	13	85	4	50	17	11	35	35	1.87
507703--507982	102	2.7	102	80	8	280	28	16	9	45	1.78
509095--509157	30	2.1	31	84	3	83	42	0	4	52	1.22
512662--512700	21	1.9	21	89	5	62	58	0	0	41	0.98
512661--512706	20	2.3	20	81	7	58	63	0	0	36	0.95
515062--515121	21	2.9	21	82	2	68	35	18	0	46	1.49
515068--515121	28	1.9	28	84	0	72	33	18	0	48	1.49
521057--521087	15	2.1	15	93	0	53	70	3	6	19	1.22
523554--523585	3	10.7	3	100	0	64	68	0	31	0	0.90
524036--524220	33	5.6	33	70	6	124	30	9	36	22	1.87
524037--524204	66	2.5	66	82	0	183	30	10	36	23	1.88
526225--526270	24	1.9	23	86	8	65	56	6	4	32	1.45
527318--527368	20	2.5	21	87	6	77	7	13	0	78	0.96
527315--527392	35	2.2	35	84	8	97	7	12	1	78	1.02
528322--528381	6	10.3	6	81	3	70	76	3	1	18	1.00
528321--528369	22	2.2	23	96	3	91	77	4	0	18	0.92
532366--532411	24	1.9	23	86	8	65	56	6	4	32	1.45
534401--534470	29	2.5	28	86	6	88	12	4	32	50	1.60
534470--534521	15	3.5	15	79	10	70	7	0	30	61	1.24
534392--534541	30	5.2	30	78	10	145	11	2	30	56	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535299--535524	80	2.8	79	83	6	258	20	2	48	29	1.62
536817--536877	31	2.0	31	83	0	77	29	11	6	52	1.62
538972--539324	182	1.9	181	90	1	564	45	20	5	28	1.74
540193--540249	27	2.2	25	78	9	62	63	8	0	28	1.24
540459--540493	17	2.1	17	89	10	54	2	42	0	54	1.15
549466--549653	30	6.3	30	81	7	168	34	3	22	39	1.70
549586--549663	30	2.6	30	87	4	95	39	6	17	35	1.76
551229--551415	40	4.7	40	78	7	152	29	16	21	32	1.95
551479--551638	50	3.2	50	80	1	142	20	21	17	40	1.92
563207--563374	59	2.9	57	76	7	158	34	6	19	39	1.78
563206--563379	30	5.9	29	80	8	165	33	6	20	39	1.78
563206--563379	88	2.0	88	84	4	226	33	6	20	39	1.78
565661--565686	2	13.0	2	100	0	52	50	0	0	50	1.00
571846--571879	6	5.5	6	89	3	50	61	0	2	35	1.11
577727--577784	20	2.9	20	81	0	71	22	15	13	48	1.80
579187--579217	15	2.0	16	93	6	55	58	22	6	12	1.58
585112--585151	20	2.0	20	100	0	80	30	25	20	25	1.99
585385--585419	17	2.0	18	88	5	54	40	5	17	37	1.73
585414--585453	20	2.1	19	85	4	53	10	0	12	77	0.99
588109--588151	18	2.4	18	80	7	52	51	0	2	46	1.13
588364--588419	29	2.0	27	83	13	69	53	1	0	44	1.11
588395--588456	29	2.1	29	81	6	70	58	0	1	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591374--591425	23	2.2	23	82	3	68	28	1	17	51	1.56
591450--591511	28	2.2	28	85	0	79	61	3	3	32	1.28
592042--592081	20	2.0	20	100	0	80	30	15	10	45	1.78
592283--592605	158	2.0	159	92	1	531	36	10	10	42	1.74
594493--594518	4	6.5	4	100	0	52	0	26	0	73	0.84
598992--599057	33	2.0	33	100	0	132	18	24	12	45	1.83
602736--603168	220	2.0	219	84	3	575	36	15	16	30	1.91
605894--606068	61	2.9	59	85	8	235	24	20	18	37	1.94
622638--622945	154	2.0	154	85	3	415	29	21	24	25	1.99
627264--627353	46	2.0	46	95	0	162	31	31	15	22	1.95
629213--629243	16	1.9	16	100	0	62	25	22	6	45	1.76
632869--632931	30	2.2	30	94	5	112	22	0	15	61	1.33
633749--633788	14	2.9	14	84	0	53	42	2	0	55	1.13
634146--634205	27	2.2	27	79	5	68	63	3	3	30	1.27
636536--636594	24	2.5	24	82	0	64	49	11	13	25	1.76
636552--636598	24	2.0	24	95	0	85	55	8	12	23	1.64
638515--638565	24	2.1	24	88	0	75	58	5	9	25	1.52
638934--638977	16	2.6	17	78	7	54	27	2	0	70	0.99
638925--638971	14	2.9	16	78	15	53	31	4	0	63	1.13
648816--648852	18	2.1	18	89	0	56	48	0	27	24	1.51
657030--657071	21	2.0	21	100	0	84	28	23	9	38	1.86
658142--658193	21	2.5	21	80	0	59	40	30	17	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658163--658281	37	3.2	37	90	0	193	39	30	19	10	1.86

Tables:   1   2

The End!