genome.fa.s15181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015181.1 Kokia drynarioides strain JFW-HI SEQ_130225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  642291

Tables:   1   2   3   

This is table  1  of  3  ( 242 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2600--2648	6	8.3	6	77	4	55	42	2	2	53	1.24
2591--2648	18	3.3	17	82	4	62	43	1	1	53	1.21
2578--2643	29	2.3	29	82	7	73	39	3	3	54	1.31
2603--2662	17	3.4	18	81	4	70	46	3	3	46	1.35
3359--3468	3	36.0	3	73	7	87	57	1	4	36	1.30
4453--4746	29	9.8	29	77	14	233	37	27	2	33	1.69
4455--4688	59	3.9	59	85	6	297	38	27	1	32	1.65
4493--4679	64	3.0	64	83	9	251	39	28	1	30	1.66
4451--4679	123	1.9	123	87	1	343	38	28	1	31	1.65
11959--11986	2	14.0	2	100	0	56	50	0	0	50	1.00
12242--12285	16	2.7	16	85	3	52	70	0	0	29	0.88
12256--12285	8	3.9	8	95	4	53	76	0	0	23	0.78
12378--12499	60	2.0	60	85	4	167	38	15	6	39	1.74
19037--19063	13	2.1	13	100	0	54	22	7	37	33	1.82
30976--31006	16	1.9	16	100	0	62	45	19	12	22	1.84
30928--31054	64	2.0	64	98	0	245	48	23	13	14	1.80
35780--35824	20	2.3	20	92	3	74	40	6	26	26	1.81
37120--37192	37	2.0	37	94	0	128	41	9	20	28	1.84
39577--39647	37	1.9	37	94	0	124	35	18	18	28	1.94
40394--40431	3	12.7	3	100	0	76	68	0	0	31	0.90
45160--45186	2	13.5	2	100	0	54	48	0	0	51	1.00
45553--45582	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49478--49506	2	14.5	2	100	0	58	48	0	0	51	1.00
50729--50759	2	15.0	2	93	6	53	48	3	0	48	1.17
51743--51835	45	2.1	45	93	0	159	23	16	19	40	1.90
61418--61484	31	2.2	31	81	5	73	38	10	13	37	1.79
66232--66310	32	2.5	32	83	8	99	26	10	16	46	1.78
73750--73788	19	2.1	19	85	0	51	30	0	2	66	1.05
73737--73776	15	2.6	15	80	4	53	30	2	0	67	1.04
82905--83035	65	2.0	65	96	0	244	47	1	12	38	1.52
88125--88159	18	1.9	18	88	0	52	22	28	5	42	1.76
96716--96759	20	2.2	20	83	0	52	9	18	22	50	1.75
104918--104957	20	2.0	21	85	5	55	42	32	7	17	1.77
106102--106148	25	2.0	25	83	8	62	68	2	4	25	1.19
106508--106544	6	6.5	6	93	6	60	45	18	35	0	1.50
123627--123653	6	4.5	6	100	0	54	33	0	51	14	1.43
134162--134203	22	1.9	22	85	9	59	26	2	4	66	1.23
146043--146074	14	2.2	15	94	5	57	40	12	12	34	1.81
146690--146727	20	2.0	20	84	5	51	39	0	0	60	0.97
146698--146737	20	2.0	20	85	0	53	42	0	0	57	0.98
150117--150263	48	3.1	47	63	16	106	41	2	6	50	1.39
153987--154021	19	1.9	17	88	11	52	60	5	2	31	1.35
154104--154158	27	2.0	27	100	0	110	49	14	3	32	1.61
162906--162950	24	2.0	23	82	8	56	31	2	6	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168216--168250	18	2.1	16	89	10	52	68	2	0	28	1.04
171008--171049	16	2.7	16	78	14	52	33	9	0	57	1.31
176139--176188	21	2.3	21	83	10	57	20	2	4	74	1.08
179957--180301	29	11.8	28	69	16	177	37	27	4	31	1.75
179956--180330	59	6.4	57	77	11	334	37	26	4	31	1.75
181467--181514	12	3.9	12	76	15	53	35	31	16	16	1.92
183434--183570	59	2.3	60	84	3	170	39	7	24	28	1.82
183575--183659	30	2.8	30	85	5	91	36	4	25	32	1.77
183612--183673	30	2.1	30	84	6	81	40	8	20	30	1.82
184797--184874	3	26.0	3	73	10	52	35	7	1	55	1.37
186444--186473	15	1.9	16	93	6	53	16	16	6	60	1.56
189504--189550	25	1.9	24	83	12	60	42	12	2	42	1.55
189514--189564	24	2.1	25	82	10	61	39	9	1	49	1.47
189453--189804	191	1.9	187	88	3	535	38	12	6	41	1.70
204866--204909	5	8.6	5	85	5	61	43	18	36	2	1.63
204866--204920	16	3.5	16	85	5	67	45	20	32	1	1.61
205028--205068	20	2.0	21	85	4	57	19	7	0	73	1.07
213072--213139	29	2.3	30	82	9	86	35	4	1	58	1.27
213424--213482	28	2.1	29	81	9	68	35	3	1	59	1.24
213517--213568	2	28.0	2	79	14	58	53	1	0	44	1.11
213517--213568	17	2.9	19	80	13	65	53	1	0	44	1.11
214253--214321	31	2.3	31	82	12	90	44	18	14	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214440--214512	31	2.4	31	84	11	89	20	8	20	50	1.73
214852--214885	16	2.1	16	88	5	50	79	0	0	20	0.73
215217--215260	22	2.0	22	86	4	61	56	4	0	38	1.20
218106--218186	25	3.1	25	79	13	83	56	0	6	37	1.24
218159--218202	21	2.1	21	87	8	63	47	0	11	40	1.39
221256--221287	6	5.3	6	96	0	55	18	15	28	37	1.92
231980--232008	15	1.9	15	100	0	58	62	0	0	37	0.96
232172--232213	17	2.4	18	88	7	61	64	0	0	35	0.94
233076--233141	29	2.3	29	94	0	114	30	33	25	10	1.90
233554--233644	45	2.0	45	97	0	173	43	4	18	32	1.70
246275--246299	3	8.3	3	100	0	50	32	0	32	36	1.58
247186--247228	19	2.2	20	87	4	61	55	18	4	20	1.60
259304--259372	28	2.5	28	86	11	97	36	1	5	56	1.32
259656--259680	13	1.9	13	100	0	50	52	0	0	48	1.00
260142--260184	19	2.3	19	80	8	52	6	2	9	81	0.95
264760--264920	59	2.7	58	75	3	160	21	15	13	49	1.78
268201--268236	11	3.3	11	84	0	54	69	25	0	5	1.10
268200--268243	22	2.0	22	95	0	79	65	22	2	9	1.32
268201--268243	11	3.9	11	81	0	50	67	23	2	6	1.27
269806--269839	3	11.3	3	87	0	50	32	32	5	29	1.81
269806--269839	15	2.3	15	100	0	68	32	32	5	29	1.81
272993--273031	20	2.0	20	89	0	60	30	5	2	61	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277714--277771	11	5.3	11	72	0	53	10	10	12	67	1.43
277706--277770	33	2.0	33	84	6	87	10	9	12	67	1.42
277717--277771	22	2.5	22	81	0	65	9	10	12	67	1.43
280746--281624	295	3.0	295	94	1	1527	35	15	15	32	1.90
289876--289906	4	7.5	4	92	7	53	29	0	22	48	1.51
290812--291053	134	1.8	132	83	3	324	26	24	11	38	1.89
290811--291132	134	2.4	132	78	8	314	26	24	12	36	1.91
291733--291974	120	2.0	120	99	0	475	29	25	19	26	1.98
292421--292484	15	3.9	16	76	12	60	40	0	3	56	1.15
293403--293456	21	2.6	21	72	0	54	55	0	5	38	1.23
295378--295474	32	3.1	31	73	15	92	60	8	5	25	1.46
296235--296303	31	2.3	31	82	7	79	39	4	1	55	1.29
296549--296601	26	2.1	24	82	6	61	24	7	3	64	1.37
304765--304809	22	2.1	21	84	8	56	71	8	6	13	1.31
305369--305433	29	2.3	27	81	5	76	61	1	6	30	1.29
306463--306503	15	2.6	16	82	14	50	53	0	4	41	1.22
307789--307863	30	2.5	30	76	6	71	36	6	9	48	1.62
310295--310344	15	3.2	15	72	10	55	56	2	6	36	1.36
315896--316008	59	1.9	60	83	5	149	40	11	14	33	1.81
316940--316979	16	2.5	16	91	0	62	40	0	22	37	1.54
317150--317286	61	2.2	63	88	5	199	50	2	2	44	1.29
320326--320387	27	2.1	29	82	11	74	64	1	0	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325180--325227	22	2.2	23	85	7	64	35	0	0	64	0.94
335061--335110	20	2.5	20	80	0	55	38	8	4	50	1.51
336605--336662	26	2.2	26	84	6	73	31	0	3	65	1.09
336934--336971	19	2.0	19	100	0	76	31	31	0	36	1.58
344363--344388	12	2.2	12	100	0	52	57	0	0	42	0.98
348778--348819	16	2.6	16	82	14	50	64	0	2	33	1.07
350560--350628	32	2.2	33	80	15	83	65	0	1	33	1.02
356026--356090	2	32.5	2	96	0	121	50	1	0	47	1.10
356945--356972	2	14.0	2	100	0	56	50	0	0	50	1.00
359396--359440	8	5.6	8	94	0	63	48	0	40	11	1.39

Tables:   1   2   3