genome.fa.s15181.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015181.1 Kokia drynarioides strain JFW-HI SEQ_130225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  642291

Tables:   1   2   3   

This is table  2  of  3  ( 242 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359405--359440	2	18.0	2	88	0	54	50	0	44	5	1.25
362085--362118	7	4.9	7	85	0	50	44	11	29	14	1.81
362085--362124	14	2.9	14	88	3	55	45	10	30	15	1.78
363195--363225	2	15.5	2	100	0	62	51	0	0	48	1.00
366479--366532	19	2.9	18	81	8	63	55	0	1	42	1.10
367625--367809	30	6.3	30	69	19	79	31	28	4	35	1.78
367625--367766	28	4.9	28	70	17	85	33	28	4	34	1.77
367711--367868	29	5.4	29	66	23	73	32	28	4	34	1.77
367729--367823	30	3.2	30	68	19	72	35	26	5	32	1.79
367698--367867	59	2.9	59	88	2	245	33	27	4	35	1.76
373511--373544	13	2.8	12	86	8	50	79	2	17	0	0.86
374073--374327	106	2.4	105	90	2	402	24	23	9	42	1.84
374882--375068	100	1.9	101	82	1	241	36	17	29	16	1.92
375420--375633	39	5.5	39	72	10	159	27	32	17	23	1.96
375427--375648	78	2.8	78	83	3	259	25	31	18	23	1.98
375673--376692	194	5.2	193	82	7	1130	35	18	22	23	1.95
376122--376692	184	3.0	184	81	6	667	35	18	22	23	1.95
384047--384100	28	1.9	28	100	0	108	25	31	12	29	1.93
386641--387223	50	11.6	50	69	11	219	35	15	20	27	1.94
386641--387184	100	5.4	100	82	5	546	35	16	20	27	1.94
386684--387170	201	2.4	200	82	4	511	35	17	19	27	1.94
388771--388814	20	2.2	20	88	8	63	20	4	2	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388781--388838	25	2.3	26	79	8	66	24	6	0	68	1.13
389030--389077	16	2.9	16	81	9	53	20	2	2	75	1.02
389187--389224	15	2.5	16	83	12	53	23	5	7	63	1.42
389196--389238	14	3.0	14	83	13	52	23	4	6	65	1.37
390807--390883	24	3.4	24	66	14	72	29	22	27	20	1.98
390783--390903	44	2.8	44	88	0	179	32	23	23	21	1.98
401221--401329	37	3.0	36	91	5	159	59	0	7	33	1.25
401232--401329	37	2.7	36	95	3	171	60	0	7	32	1.24
404623--404668	25	1.9	23	86	8	65	28	4	6	60	1.40
410795--410828	17	2.0	17	88	0	50	17	14	11	55	1.68
413549--414503	318	3.0	319	92	0	1601	31	16	21	30	1.95
422512--422551	21	1.9	21	84	0	53	25	5	45	25	1.73
432180--432213	17	2.0	17	88	0	50	32	41	14	11	1.82
433835--433908	26	2.9	25	76	13	78	28	25	17	28	1.98
433982--434073	28	3.2	29	77	9	100	33	19	13	33	1.90
434608--434764	77	2.0	77	95	0	278	41	14	7	36	1.75
434627--434747	38	3.2	38	65	19	97	38	14	7	38	1.75
435905--436032	28	4.5	28	76	3	87	42	20	21	15	1.89
436217--436365	56	2.7	55	85	4	190	26	27	13	32	1.93
449261--449297	15	2.4	16	90	4	58	62	0	35	2	1.10
449743--449784	18	2.4	18	88	4	59	16	14	11	57	1.66
449743--449791	17	2.8	16	82	11	53	14	14	12	59	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456161--456214	27	2.0	27	85	7	74	31	29	12	25	1.93
464003--464046	18	2.4	18	88	3	61	13	18	11	56	1.66
480740--480869	39	3.4	38	78	3	125	33	16	16	34	1.91
482400--482447	24	2.0	24	87	0	69	20	39	12	27	1.89
482408--482461	24	2.2	24	87	6	74	18	38	12	29	1.88
493710--493756	3	15.7	3	78	8	51	27	4	4	63	1.31
496589--496622	18	1.9	18	94	5	61	61	5	11	20	1.50
497093--497129	19	1.9	19	88	0	56	56	8	5	29	1.51
503095--503185	18	5.5	17	71	21	59	79	1	16	3	0.93
503098--503200	8	12.2	8	73	11	73	78	0	17	2	0.93
503095--503200	13	7.5	13	71	22	63	78	0	17	2	0.93
503111--503200	26	3.5	25	80	8	92	77	1	20	1	0.89
503099--503200	34	2.9	35	80	11	104	78	0	17	2	0.93
503110--503197	44	2.0	43	84	6	115	77	1	20	1	0.90
503149--503200	27	1.9	26	88	7	77	76	1	21	0	0.87
504130--504867	50	14.9	51	72	9	431	34	15	31	17	1.92
504363--504719	148	2.4	148	83	3	441	34	15	32	17	1.91
504192--504819	198	3.2	191	78	8	532	34	15	32	17	1.92
504188--504734	247	2.2	248	80	6	635	34	16	31	17	1.92
504151--504867	99	7.2	99	74	7	454	34	15	32	17	1.91
504449--504867	198	2.1	197	85	1	552	33	15	33	17	1.91
504510--504909	99	4.1	98	74	6	324	33	17	33	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505167--505653	39	12.5	39	66	8	116	26	30	17	25	1.97
505171--505860	78	8.9	78	79	6	576	25	31	17	25	1.97
505235--505813	39	14.9	38	66	11	158	25	31	17	25	1.97
505716--505844	38	3.4	38	71	11	120	22	35	16	25	1.94
506610--506646	19	1.9	19	94	0	65	56	10	5	27	1.55
522198--522239	21	2.0	20	82	13	50	35	4	7	52	1.50
523079--523258	38	4.7	38	77	1	135	33	15	15	35	1.89
532314--532358	4	10.5	4	81	13	54	48	4	0	46	1.22
532314--532347	9	3.9	9	88	7	52	50	2	0	47	1.16
532314--532358	21	2.1	21	88	12	65	48	4	0	46	1.22
537464--537858	131	3.0	132	93	3	693	26	19	17	36	1.93
537464--537866	136	3.0	135	94	2	706	26	19	17	36	1.94
539783--539819	3	12.3	3	100	0	74	64	0	0	35	0.94
539954--539995	17	2.4	18	80	15	52	21	14	0	64	1.29
545344--545385	17	2.4	17	92	4	66	21	26	2	50	1.61
545324--545371	24	2.0	24	87	0	69	18	33	2	45	1.61
549782--549827	23	2.0	22	87	4	65	54	15	28	2	1.53
561253--561279	11	2.5	11	100	0	54	33	0	0	66	0.92
563088--563168	24	3.4	24	85	0	108	35	13	27	23	1.92
569854--570555	42	17.3	41	79	6	679	29	26	17	25	1.98
569854--570555	201	3.5	199	83	4	872	29	26	17	25	1.98
569854--570585	123	6.0	124	80	8	699	30	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571137--571186	23	2.2	23	89	3	75	54	10	30	6	1.58
580131--580400	150	1.8	150	85	3	382	39	0	35	25	1.56
584202--584438	28	8.4	28	83	1	240	22	16	10	50	1.76
584202--584423	85	2.6	85	83	0	257	22	17	10	50	1.76
584202--584438	113	2.1	113	82	3	262	22	16	10	50	1.76
588252--588302	25	2.0	25	88	0	75	58	7	5	27	1.49
594837--594955	57	2.1	59	83	3	152	31	20	5	42	1.75
596786--596882	10	9.2	10	72	17	72	37	19	5	38	1.74
596731--596882	68	2.3	64	87	5	214	37	19	5	38	1.74
596787--596882	21	4.6	21	73	18	83	36	19	5	38	1.75
596750--596854	23	4.7	23	67	22	71	35	20	6	38	1.79
597327--597465	36	3.9	36	80	11	158	37	20	9	33	1.84
597289--597465	72	2.5	72	84	1	230	37	20	9	32	1.84
599907--599959	22	2.4	22	84	12	65	32	22	20	24	1.98
602331--602370	22	1.9	20	100	0	62	47	10	20	22	1.79
605595--605651	21	2.7	21	86	0	69	42	15	12	29	1.84
605613--605652	21	1.9	21	94	0	71	42	12	17	27	1.85
609686--609737	4	12.8	4	82	15	54	17	3	0	78	0.89
612107--612136	16	1.9	16	93	6	53	16	13	0	70	1.18
612102--612162	22	2.8	22	87	7	72	14	11	1	72	1.20
612116--612162	21	2.2	22	92	3	78	14	8	2	74	1.15
613683--613760	24	3.2	25	80	8	81	51	1	30	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620927--621184	99	2.6	98	87	1	372	34	15	20	28	1.94
621044--621394	181	1.9	182	85	7	491	35	15	21	26	1.94
621772--621816	23	1.9	24	81	4	56	46	40	2	11	1.52
626671--626781	23	4.7	23	80	10	127	11	24	20	43	1.85
626671--626781	48	2.4	48	82	10	131	11	24	20	43	1.85
628367--628421	25	2.2	25	100	0	110	36	14	7	41	1.74
630033--630083	21	2.4	21	100	0	102	27	5	9	56	1.54
631770--631809	4	10.0	4	84	10	55	25	2	0	72	0.97
637886--638013	41	3.1	41	80	5	143	35	17	29	17	1.93
637956--638076	63	1.9	63	87	0	179	32	19	28	20	1.97

Tables:   1   2   3