genome.fa.s15188.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015188.1 Kokia drynarioides strain JFW-HI SEQ_130232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  508151

Tables:   1   2   

This is table  2  of  2  ( 217 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216195--216567	201	1.9	191	83	6	478	27	26	17	28	1.97
220560--220608	15	3.3	15	78	13	57	36	0	0	63	0.95
220770--220805	16	2.2	18	85	14	51	41	5	16	36	1.72
221272--221368	30	3.2	29	70	8	77	24	12	11	51	1.72
221359--221383	13	1.9	13	100	0	50	0	0	16	84	0.63
221753--221789	17	2.2	17	95	0	65	32	0	35	32	1.58
222419--222508	33	2.8	33	83	11	123	45	0	0	54	0.99
226528--226578	24	2.1	24	82	10	59	37	5	0	56	1.23
226547--226713	58	2.9	58	83	7	205	43	1	1	52	1.22
227552--227612	17	3.6	17	80	8	70	52	4	3	39	1.39
228226--228344	47	2.5	47	98	0	229	21	28	15	35	1.93
228273--228486	115	1.9	114	92	2	358	22	24	19	32	1.97
239609--239983	30	12.7	29	78	11	311	32	2	27	37	1.70
239544--239983	59	7.5	57	78	10	331	32	3	28	36	1.73
241072--241111	18	2.2	18	86	0	53	35	10	7	47	1.65
241864--241924	17	3.6	17	76	8	61	50	4	4	39	1.45
244424--244506	29	3.1	27	78	11	82	50	1	0	48	1.08
244581--244626	23	2.0	22	83	4	56	54	2	2	41	1.25
244708--244742	18	1.9	18	88	0	52	45	5	0	48	1.26
259916--259963	17	2.8	17	93	0	78	25	29	6	39	1.80
269236--269378	68	2.1	68	90	0	232	39	11	22	26	1.89
277276--277381	25	4.2	25	79	6	106	30	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278445--278476	15	2.1	15	94	0	55	31	3	0	65	1.08
282120--282674	275	2.0	275	97	0	1038	38	20	14	27	1.91
293215--293255	20	2.0	22	85	9	59	46	4	7	41	1.53
294239--294313	39	1.9	38	100	0	141	64	5	8	21	1.40
294538--294726	59	3.2	59	78	6	141	43	4	20	31	1.71
294561--294718	29	5.4	29	78	6	147	43	3	22	31	1.69
303668--303709	21	2.0	21	86	9	59	28	23	7	40	1.81
304254--304304	20	2.5	21	81	15	54	47	0	11	41	1.40
308918--309030	29	3.9	28	77	8	100	45	4	19	30	1.70
308983--309046	30	2.1	31	88	8	96	51	3	15	29	1.59
310649--310806	41	3.8	41	84	3	181	37	10	25	26	1.87
310694--310825	41	3.2	41	86	1	156	40	9	24	26	1.85
311377--311426	24	2.1	24	100	0	100	28	16	18	38	1.91
317676--317822	43	3.5	42	78	5	154	38	10	25	25	1.88
327656--327814	54	2.9	53	79	3	174	28	18	22	30	1.97
328222--330025	898	2.0	900	87	3	2612	37	12	14	36	1.83
329918--329987	29	2.3	31	81	18	94	47	4	8	40	1.54
329934--329992	29	2.1	29	90	6	95	49	1	8	40	1.43
330444--330473	5	6.0	5	100	0	60	0	60	0	40	0.97
334893--334951	30	2.0	30	83	12	77	30	1	13	54	1.49
337654--337704	13	4.0	13	76	2	50	66	1	13	17	1.34
341832--341864	17	1.9	17	93	0	57	51	12	6	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355169--355251	44	2.0	44	83	7	109	40	8	26	24	1.83
355228--355313	40	2.2	40	93	0	145	40	9	22	27	1.84
355988--356042	21	2.6	21	76	0	65	30	16	21	30	1.95
356286--356341	29	1.9	29	85	7	78	21	7	26	44	1.78
360567--360720	41	3.8	41	92	0	236	40	11	23	24	1.87
360572--360764	82	2.4	82	81	3	192	41	11	21	25	1.86
367691--367877	41	4.5	40	75	12	146	37	11	25	25	1.89
367736--367848	41	2.8	41	86	2	156	38	11	24	24	1.89
367736--367892	82	1.9	82	79	5	174	38	10	24	26	1.88
369366--369687	158	2.0	158	91	1	520	42	17	17	22	1.89
371269--371476	84	2.5	84	79	8	210	29	17	15	37	1.90
376735--378209	642	2.3	635	85	4	1982	41	11	25	21	1.87
383598--383665	35	1.9	35	84	0	91	23	30	4	41	1.74
385654--385722	29	2.4	29	85	0	93	42	23	13	21	1.88
389914--389988	34	2.2	35	83	13	102	34	2	10	52	1.50
403313--403567	127	2.0	127	87	1	368	27	14	18	39	1.90
423263--423296	3	11.0	3	87	6	50	2	29	0	67	1.05
433768--433816	25	2.0	25	84	8	64	22	8	30	38	1.83
441837--441919	35	2.4	35	83	0	94	24	24	27	24	2.00
442024--442074	22	2.3	22	100	0	102	21	21	25	31	1.98
444405--444442	18	2.1	18	85	9	51	50	13	10	26	1.73
448938--448979	21	2.0	21	100	0	84	42	0	9	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450597--450663	16	4.2	17	79	12	70	49	14	1	34	1.53
450604--450671	16	4.2	16	78	10	68	47	14	1	36	1.54
455760--455795	18	2.1	18	89	5	56	47	0	2	50	1.15
456564--456605	7	6.0	7	78	10	50	45	0	0	54	0.99
456624--456660	16	2.3	16	86	13	58	40	0	0	59	0.97
458029--458110	42	2.0	42	87	0	119	36	19	12	31	1.89
459104--459136	17	1.9	17	93	0	57	60	9	6	24	1.49
466283--466330	23	2.1	23	84	3	62	12	6	2	79	1.01
483779--483803	2	12.5	2	100	0	50	48	0	0	52	1.00
485644--485677	16	2.1	16	100	0	68	17	5	29	47	1.71
486270--486316	19	2.4	20	89	3	69	38	0	0	61	0.96
487143--487187	15	3.0	15	83	6	56	37	0	0	62	0.96
489360--489407	25	1.9	25	95	0	87	27	16	4	52	1.62
489566--489618	18	2.8	19	74	8	54	56	5	1	35	1.34
490548--490588	14	2.9	14	92	0	64	36	0	19	43	1.51
491780--491815	17	2.1	18	89	5	56	55	11	5	27	1.57
495120--495177	28	2.1	28	87	6	82	37	0	15	46	1.46
495365--495415	20	2.5	21	87	6	70	17	0	29	52	1.45
495472--495505	14	2.3	15	90	5	52	29	2	20	47	1.65
495551--495587	6	6.2	6	93	0	65	64	16	2	16	1.40
495974--496026	27	2.0	27	92	0	88	28	39	13	18	1.88
497881--497976	36	2.8	33	82	11	104	40	3	0	56	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497897--497963	21	3.5	21	69	23	74	38	1	0	59	1.06
497888--497963	36	2.1	36	97	0	143	38	2	0	59	1.12
500983--501032	21	2.4	21	93	0	82	48	6	18	28	1.71
501491--501529	5	7.8	5	83	11	53	84	12	0	2	0.72
501491--501529	15	2.6	15	91	0	69	84	12	0	2	0.72
501710--501763	15	3.3	15	74	18	54	44	0	1	53	1.11
501905--501962	25	2.3	26	82	14	68	55	0	3	41	1.17
501944--501993	12	4.5	12	76	16	54	46	0	0	54	1.00
501944--501978	11	3.1	11	88	8	52	42	0	0	57	0.99

Tables:   1   2

The End!