genome.fa.s15190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015190.1 Kokia drynarioides strain JFW-HI SEQ_130234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  593296

Tables:   1   2   

This is table  1  of  2  ( 164 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963--990	13	2.2	13	100	0	56	7	14	0	78	0.95
2442--2475	12	2.8	12	86	4	50	82	5	5	5	0.95
9561--9591	4	7.8	4	92	0	53	25	3	22	48	1.66
24221--24289	21	3.2	21	65	15	59	31	21	8	37	1.84
24208--24297	44	2.0	44	100	0	180	33	22	8	35	1.85
24229--24298	22	3.2	22	65	15	63	31	24	8	35	1.85
26069--26093	13	1.9	13	100	0	50	20	0	0	80	0.72
34680--35013	183	1.8	184	85	5	480	25	8	31	34	1.85
36934--37012	33	2.4	33	100	0	158	27	18	25	27	1.98
39344--39379	6	6.0	6	100	0	72	16	0	50	33	1.46
42229--42261	2	16.5	2	100	0	66	51	0	0	48	1.00
42318--42351	3	11.3	3	100	0	68	32	0	0	67	0.91
43882--43913	16	2.0	16	93	0	55	56	9	0	34	1.32
52118--52247	65	2.0	65	90	0	206	23	11	23	40	1.87
59670--59752	40	2.1	40	84	4	105	38	10	21	28	1.87
69596--69655	27	2.2	27	80	11	70	53	8	0	38	1.31
69590--69685	34	2.7	34	74	7	86	54	6	0	39	1.26
71239--71281	17	2.5	17	100	0	86	44	23	4	27	1.73
105415--105459	4	11.5	4	78	21	51	48	0	0	51	1.00
105415--105459	9	5.8	8	80	20	51	48	0	0	51	1.00
106018--106181	84	2.0	82	90	4	258	40	15	23	20	1.91
125186--125218	17	1.9	17	88	11	50	66	0	3	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126019--126076	22	2.8	22	82	17	63	58	0	1	39	1.08
129820--129919	3	36.0	3	75	16	83	66	0	32	2	1.03
129823--129922	8	12.5	8	73	12	89	66	0	32	2	1.03
132145--132554	206	2.0	206	94	0	712	36	22	9	30	1.86
134030--134126	48	2.0	48	87	0	140	26	7	15	50	1.70
134030--134143	48	2.4	48	82	5	115	26	6	15	51	1.67
134405--134560	79	2.0	78	84	3	206	38	21	12	27	1.90
142031--142080	21	2.4	21	100	0	100	34	14	16	36	1.88
142052--142206	79	2.0	78	90	1	247	38	18	16	27	1.91
152196--152226	4	7.8	4	100	0	62	25	0	22	51	1.48
155415--155518	51	2.0	51	94	0	181	40	17	11	30	1.85
155983--156048	29	2.2	30	81	10	82	60	13	1	24	1.42
160258--160337	31	2.6	31	78	4	81	45	7	5	42	1.54
164792--164821	14	2.1	15	93	6	53	46	6	23	23	1.75
174131--174270	70	2.0	70	97	0	262	27	12	15	44	1.82
183386--183415	15	2.0	15	93	0	51	23	40	0	36	1.55
188098--188122	12	2.1	12	100	0	50	40	0	32	28	1.57
188147--188202	29	1.9	29	85	0	76	35	10	14	39	1.81
189620--189678	29	2.0	29	86	0	82	38	6	5	49	1.52
191927--191987	27	2.1	29	82	8	72	49	3	4	42	1.40
191988--192026	15	2.4	17	87	8	55	35	2	0	61	1.10
193718--193743	12	2.2	12	100	0	52	57	0	34	7	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194063--194105	22	2.1	22	87	12	65	55	0	0	44	0.99
194046--194094	13	3.5	13	75	24	55	55	0	0	44	0.99
194029--194102	29	2.6	29	87	8	123	50	0	0	50	1.00
198607--198741	50	2.7	49	86	5	182	40	15	16	28	1.89
198798--198841	24	1.9	24	90	9	74	43	20	9	27	1.82
200445--200534	38	2.4	38	86	3	128	33	24	15	26	1.95
202906--202936	10	3.1	10	95	0	53	32	3	9	54	1.49
203277--203334	29	2.0	29	100	0	116	31	13	3	51	1.58
210468--210507	21	1.9	21	84	0	53	32	17	17	32	1.93
215934--215963	14	2.1	14	100	0	60	30	20	16	33	1.94
242930--242955	7	3.7	7	100	0	52	57	0	42	0	0.98
249020--249078	29	2.0	29	100	0	118	20	22	6	50	1.71
250500--250529	10	3.0	10	100	0	60	90	0	0	10	0.47
251244--251293	20	2.5	19	80	6	55	30	8	4	58	1.45
252494--252605	59	1.9	59	83	3	145	47	8	17	25	1.77
255581--255664	29	2.9	29	78	5	98	35	14	10	39	1.81
255581--255648	28	2.4	28	85	5	82	36	16	11	35	1.85
257265--257309	8	5.8	8	76	23	51	64	0	0	35	0.94
258451--258601	74	2.0	74	100	0	302	43	29	3	23	1.71
259688--259721	17	2.0	17	100	0	68	35	17	11	35	1.87
280367--280399	16	2.0	17	88	5	50	42	21	9	27	1.83
284792--284840	15	3.3	15	70	0	53	18	36	18	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284777--284859	30	2.8	30	85	3	87	21	34	19	24	1.96
287828--287865	3	12.7	3	100	0	76	31	0	0	68	0.90
290283--290311	12	2.5	12	94	5	51	6	0	37	55	1.27
302972--303099	47	2.7	47	77	8	123	34	23	17	25	1.96
317409--317445	19	2.0	19	89	5	58	13	13	0	72	1.11
320890--321051	25	6.4	25	80	2	153	33	29	16	20	1.95
320918--321051	51	2.6	50	81	3	151	34	26	17	20	1.96
320902--321047	76	1.9	76	85	2	204	32	29	17	20	1.96
321994--322028	16	2.2	16	90	5	54	22	11	5	60	1.52
326874--327415	268	2.0	272	94	2	950	42	14	9	32	1.78
328372--328629	26	10.1	26	68	9	145	32	28	15	23	1.95
328482--328623	25	5.7	24	73	9	97	36	27	14	21	1.92
328372--328605	51	4.6	50	77	3	182	32	29	14	23	1.95
328360--328605	101	2.4	102	78	1	278	32	29	14	23	1.94
328516--328636	51	2.4	50	79	5	147	37	26	14	22	1.92
331689--331729	17	2.4	17	91	0	73	39	17	21	21	1.93
349817--349858	18	2.3	18	95	4	75	16	4	33	45	1.69
355144--355260	44	2.7	44	98	0	225	47	12	18	21	1.82
366499--366567	20	3.3	21	70	13	61	63	1	24	10	1.34
370104--370150	24	1.9	25	86	4	69	6	12	4	76	1.12
372783--372924	51	2.8	50	78	8	162	39	12	11	36	1.79
372811--372924	51	2.3	50	85	1	165	39	13	12	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373844--373887	21	2.1	21	82	0	52	18	20	0	61	1.35
375985--376054	23	3.0	22	76	13	70	17	10	4	68	1.34
375993--376076	24	3.3	26	76	19	70	15	9	3	71	1.26
376035--376098	26	2.5	26	80	11	71	17	7	6	68	1.35
377194--377341	50	2.9	50	83	4	190	37	12	13	35	1.83
381104--381171	25	2.7	25	95	4	120	19	14	14	51	1.76
381446--381542	47	2.1	47	100	0	194	41	17	10	30	1.83
385872--385926	24	2.3	24	87	3	76	38	29	20	12	1.89
388051--388083	18	1.9	17	88	11	50	48	6	9	36	1.60
393015--393048	9	3.9	9	84	7	52	38	0	0	61	0.96
394457--394608	50	3.0	50	87	4	180	57	9	4	28	1.50
397528--397578	24	2.1	24	100	0	102	13	29	27	29	1.94
398877--398909	17	2.0	17	88	5	50	18	33	18	30	1.94
400731--400945	107	2.0	107	100	0	430	37	6	18	37	1.77
401223--401272	24	2.1	24	100	0	100	48	4	24	24	1.68
408096--408129	16	2.0	18	88	11	54	41	2	2	52	1.31
408344--408382	19	2.0	21	85	10	55	51	0	5	43	1.24
411563--411708	73	2.0	73	97	0	274	23	11	18	45	1.82
414733--414765	16	2.1	16	100	0	66	18	6	18	57	1.60
416699--416814	23	4.9	23	72	19	69	22	4	4	68	1.24
416786--416823	15	2.5	15	91	8	60	21	0	5	73	1.02
416728--416823	4	24.2	4	71	17	67	22	2	4	70	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417093--417149	21	2.7	21	78	5	71	19	1	7	71	1.17
417094--417162	20	3.4	20	75	16	63	21	1	7	69	1.21
435575--435627	26	2.0	27	85	14	74	69	1	5	22	1.19
442286--442327	9	4.7	9	84	0	57	42	19	9	28	1.82
442286--442326	18	2.3	18	91	0	64	41	19	9	29	1.83
442674--442743	36	1.9	36	91	0	113	31	15	14	38	1.88
454403--454452	24	2.0	24	84	11	64	40	46	4	10	1.56
457083--457221	42	3.4	41	80	5	165	31	17	25	25	1.97
457083--457240	42	3.8	40	76	5	129	31	17	24	26	1.97
463329--463378	21	2.4	21	86	0	64	32	28	14	26	1.94

Tables:   1   2