genome.fa.s15194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015194.1 Kokia drynarioides strain JFW-HI SEQ_130238, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139465

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153--201	23	2.2	21	82	7	53	40	2	2	55	1.23
1646--1723	41	1.9	41	89	0	120	32	10	26	30	1.90
4362--4431	21	3.7	18	69	16	52	68	8	2	20	1.29
4580--4612	17	2.0	17	88	5	50	27	0	3	69	1.03
16981--17230	124	2.0	124	98	0	482	34	14	16	34	1.89
22974--23009	2	18.0	2	100	0	72	0	50	0	50	1.00
28081--28112	2	16.0	2	100	0	64	0	50	0	50	1.00
28622--28686	29	2.1	29	83	8	76	58	4	3	33	1.34
31628--31677	26	1.9	26	84	8	66	30	6	8	56	1.52
35636--37677	151	13.5	150	86	4	2602	40	16	6	36	1.74
35667--37677	761	2.7	755	86	5	2725	40	16	6	36	1.75
54064--54102	20	2.0	20	84	0	51	23	0	0	76	0.78
54209--54263	27	2.0	27	89	6	85	32	21	34	10	1.89
54434--54499	4	16.2	4	78	9	62	65	0	31	3	1.08
54434--54466	17	1.9	17	100	0	66	69	0	30	0	0.88
54434--54500	29	2.3	30	77	10	77	64	0	32	2	1.09
55907--55988	43	1.9	43	92	5	139	43	13	9	32	1.77
57216--57282	28	2.3	29	84	5	82	31	7	0	61	1.24
64870--64895	13	2.0	13	100	0	52	38	15	15	30	1.88
68539--68576	15	2.4	16	82	13	51	13	13	0	73	1.09
68868--68999	65	2.0	64	98	1	255	37	13	3	46	1.59
77699--77723	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83533--83596	18	3.3	19	66	18	51	29	23	14	32	1.94
83530--83622	39	2.4	38	83	7	116	31	21	16	31	1.95
84593--84643	26	2.0	26	100	0	102	29	11	15	43	1.82
92581--92801	119	1.9	116	91	4	363	44	6	1	47	1.40
92700--93020	143	2.2	144	82	5	382	43	9	2	44	1.50
93329--93537	42	5.0	42	81	4	244	35	22	20	21	1.96
93328--93537	82	2.5	83	83	6	264	35	22	20	21	1.96
93957--93994	13	3.2	12	82	10	51	7	5	5	81	0.98
94214--94249	15	2.3	15	90	4	54	5	22	2	69	1.22
95979--96022	19	2.4	18	88	3	61	52	0	2	45	1.13
97013--97469	29	15.6	30	70	17	188	35	24	3	37	1.72
97007--97263	59	4.4	59	81	6	290	33	22	3	40	1.71
97013--97263	116	2.2	118	82	6	298	34	22	3	39	1.71
96973--97297	116	2.8	113	75	10	291	33	22	3	40	1.72
97274--97494	58	3.7	62	75	10	192	37	25	3	33	1.74
97330--97556	29	7.8	29	76	7	147	35	27	6	30	1.81
108143--108298	78	2.0	78	92	0	258	22	20	18	38	1.93
115402--115456	27	2.0	27	100	0	110	41	29	10	18	1.84
117242--117700	238	1.9	236	87	5	665	41	15	6	37	1.71
118724--119260	152	3.6	147	84	9	629	45	10	2	40	1.53
118899--119139	52	4.8	52	69	15	155	46	9	2	41	1.51
119006--119260	137	1.8	140	85	6	367	45	9	3	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119675--119743	12	6.0	11	88	6	59	72	0	1	26	0.93
119686--119747	3	21.0	3	90	3	99	67	0	1	30	1.00
119746--119771	3	8.7	3	100	0	52	34	0	30	34	1.58
121456--121505	27	1.9	25	88	8	73	40	0	2	58	1.10
122184--122213	11	2.7	11	100	0	60	46	0	16	36	1.47
125270--125350	31	2.6	31	88	0	108	34	13	13	38	1.84
127112--127216	29	3.5	29	77	16	115	45	13	15	25	1.82
127115--127305	59	3.2	60	81	8	221	47	11	16	25	1.80
127112--127293	61	3.0	59	84	6	215	46	10	15	26	1.79
127207--127305	31	3.3	30	69	19	80	46	10	16	27	1.78
127347--127383	2	18.5	2	100	0	74	51	0	0	48	1.00
128956--128998	22	2.1	20	83	12	52	37	2	4	55	1.33
130482--130537	21	2.7	21	80	5	60	35	25	10	28	1.89
131208--131401	53	3.7	53	81	1	228	32	21	17	27	1.96
131208--131401	106	1.8	106	85	0	271	32	21	17	27	1.96
132319--132353	17	2.1	17	100	0	70	22	0	11	65	1.24
133050--133385	112	3.0	112	95	0	584	36	13	15	34	1.87
134319--134370	23	2.3	22	83	3	59	36	11	3	48	1.58
135768--136077	157	2.0	152	92	3	512	49	5	18	27	1.69

Tables:   1

The End!