genome.fa.s15196.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015196.1 Kokia drynarioides strain JFW-HI SEQ_130240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  599855

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393395--393971	29	19.8	29	80	9	572	34	29	4	32	1.77
393394--394060	59	11.3	58	79	12	578	34	29	3	32	1.76
393398--394060	58	11.2	59	79	11	483	34	29	3	32	1.76
393931--394011	40	2.0	40	90	4	128	32	25	3	38	1.74
393974--394074	29	3.5	29	86	2	132	32	31	1	33	1.69
393905--394040	69	2.0	69	84	5	177	32	29	2	35	1.73
393873--394060	98	1.9	98	88	4	281	34	29	3	32	1.74
395731--395819	24	3.9	23	77	12	78	56	8	8	25	1.60
395747--395803	22	2.5	24	85	5	73	61	10	7	21	1.52
397711--397767	24	2.4	24	81	0	78	49	12	8	29	1.70
422377--422440	28	2.3	27	89	2	92	37	15	7	39	1.77
431013--431049	19	2.0	19	89	5	58	67	0	0	32	0.91
431716--431930	104	2.1	104	84	3	272	37	28	9	25	1.87
455786--455824	15	2.4	16	87	8	53	35	0	0	64	0.94
467470--467548	31	2.4	34	80	16	96	44	7	2	45	1.45
468494--468526	11	3.1	11	82	8	50	33	0	3	63	1.10
470437--470506	34	2.1	34	86	10	99	38	0	4	57	1.19
471955--472015	22	2.7	23	75	12	56	62	1	1	34	1.15
488501--488551	20	2.5	20	100	0	102	64	5	13	15	1.46
494881--494906	13	2.0	13	100	0	52	23	15	23	38	1.92
496361--496405	19	2.2	20	80	11	56	48	0	2	48	1.13
496705--496744	20	1.9	22	90	10	66	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498824--498980	30	5.3	30	81	6	185	40	19	5	35	1.74
512331--512432	53	1.9	53	90	4	161	21	11	16	50	1.77
519419--519452	15	2.2	16	89	5	52	32	0	0	67	0.91
519411--519566	83	1.9	81	83	9	199	39	3	3	54	1.33
532602--532640	19	2.1	19	85	0	51	56	0	2	41	1.13
549397--549421	8	3.1	8	100	0	50	60	0	0	40	0.97
567142--567204	30	2.1	30	100	0	126	30	9	15	44	1.79
570768--570879	56	2.0	56	89	1	172	29	18	8	43	1.79
587007--587047	21	2.0	21	85	0	55	80	0	2	17	0.82
591671--591701	16	2.0	15	93	6	53	45	0	9	45	1.36

Tables:   1   2

The End!