genome.fa.s15201.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015201.1 Kokia drynarioides strain JFW-HI SEQ_130245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  585754

Tables:   1   2   

This is table  2  of  2  ( 201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425440--425525	7	12.0	7	72	11	50	74	1	24	0	0.89
425446--425526	14	5.7	14	75	16	69	74	0	25	0	0.83
425449--425526	15	5.5	14	71	21	56	74	0	25	0	0.82
425445--425526	23	3.5	24	72	9	71	74	0	25	0	0.82
425527--425557	12	2.6	12	94	0	53	32	0	0	67	0.91
429911--429952	17	2.6	16	85	14	59	19	7	0	73	1.05
431459--431551	43	2.2	42	83	9	109	31	9	9	49	1.68
432003--432051	6	8.2	6	95	0	89	34	30	32	2	1.69
435272--435327	26	2.1	27	80	12	62	58	10	1	28	1.41
435363--435408	4	11.2	4	86	13	67	0	23	0	76	0.79
435357--435411	11	5.0	11	81	16	69	0	27	0	72	0.85
435363--435405	9	5.1	9	91	8	65	0	23	0	76	0.78
436136--436162	6	4.5	6	100	0	54	81	0	18	0	0.69
436736--436847	30	3.8	28	78	12	91	29	5	6	58	1.45
436736--436846	29	3.8	29	76	16	104	29	5	5	59	1.42
438644--438748	54	1.9	54	86	5	147	24	5	13	56	1.59
439529--439573	22	2.0	22	83	8	56	35	6	8	48	1.61
440558--440585	14	2.0	14	100	0	56	28	35	14	21	1.92
441053--441095	21	2.0	21	82	8	52	34	9	2	53	1.46
441106--441161	5	10.6	5	77	11	58	16	1	5	76	1.05
443845--443942	30	3.3	30	70	11	85	25	16	22	35	1.94
443865--444014	28	5.2	28	65	10	88	30	14	20	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443846--444033	58	3.3	58	81	4	220	28	15	20	35	1.94
446993--447055	30	2.1	30	85	5	83	34	22	14	28	1.93
450255--450299	12	3.8	12	84	0	63	64	0	35	0	0.94
450255--450302	24	2.0	24	91	0	78	66	0	33	0	0.92
453776--453838	32	2.0	32	93	0	108	25	4	7	61	1.43
460065--460131	26	2.6	26	81	9	66	26	29	19	23	1.98
476374--476464	44	2.0	45	95	2	166	27	16	15	40	1.88
477926--478022	48	2.0	48	100	0	194	31	18	8	41	1.80
478613--478667	15	3.7	15	80	0	56	20	29	27	23	1.99
491143--491354	30	7.1	29	81	6	160	43	22	16	16	1.87
491145--491304	60	2.7	60	87	1	232	42	22	17	17	1.89
491270--491385	60	1.9	59	82	6	144	49	19	12	18	1.79
491287--491411	30	4.2	29	72	11	85	48	23	10	17	1.77
491287--491400	60	1.9	58	82	3	138	48	22	10	18	1.79
495287--495324	20	1.9	20	88	0	58	34	23	23	18	1.96
496990--497114	50	2.5	50	78	0	124	24	15	16	43	1.87
497143--497831	305	2.3	301	83	3	884	27	18	16	37	1.93
497143--497827	102	6.8	102	81	4	717	27	18	16	37	1.92
497677--497977	152	2.0	152	85	1	406	26	18	18	36	1.94
497254--497875	50	12.3	51	66	15	182	27	17	16	37	1.92
497813--498143	102	3.3	102	84	0	430	27	20	18	34	1.95
497459--498111	356	1.8	354	91	0	1090	27	18	17	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497575--498085	254	2.0	254	86	0	718	27	18	18	35	1.95
497958--498130	51	3.4	51	73	2	159	26	23	16	34	1.95
510465--510499	12	2.8	12	91	8	52	62	2	31	2	1.24
522477--522506	14	2.1	15	93	6	53	30	23	0	46	1.52
522786--522840	21	2.4	23	79	8	60	43	27	7	21	1.79
523295--523425	31	3.9	31	70	20	95	64	0	23	10	1.30
523371--523422	10	5.1	10	74	4	50	69	0	25	5	1.10
527981--528043	26	2.5	26	92	2	101	25	17	26	30	1.97
527981--528055	26	2.9	26	88	4	89	26	18	25	29	1.98
527978--528202	98	2.3	98	86	0	315	31	13	24	30	1.94
528121--528262	72	2.0	72	88	2	214	33	13	21	31	1.92
529336--529414	26	3.0	26	84	0	104	31	15	22	30	1.95
529388--529562	72	2.4	72	86	0	233	32	14	22	30	1.94
529539--529612	26	2.8	26	73	4	69	32	13	24	29	1.93
530605--530705	26	3.9	26	78	2	105	31	16	22	28	1.96
530657--530831	72	2.4	72	89	0	269	32	16	22	28	1.95
530808--530881	26	2.8	26	75	0	67	35	14	21	28	1.93
531887--531944	26	2.2	26	87	0	80	25	13	25	34	1.93
532029--532184	72	2.2	73	82	6	185	33	14	22	29	1.94
532150--532210	26	2.3	26	86	5	79	29	16	22	31	1.96
531949--532313	165	2.2	166	79	8	375	31	15	22	30	1.95
536197--536278	32	2.6	32	77	14	89	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536695--536985	145	2.0	145	97	0	555	43	14	9	31	1.78
537678--537706	10	3.0	10	95	5	51	79	0	0	20	0.74
539378--539423	23	2.0	23	83	8	58	45	30	2	21	1.64
541051--541077	14	1.9	14	100	0	54	70	7	14	7	1.32
541093--541141	18	2.7	18	80	3	53	77	6	12	4	1.09
543159--543187	12	2.4	12	100	0	58	44	0	10	44	1.38
543246--543279	11	3.0	12	87	12	54	79	0	0	20	0.73
543245--543278	17	2.0	17	88	0	50	76	0	0	23	0.79
543297--543359	26	2.4	26	94	2	108	60	0	3	36	1.13
545029--545053	10	2.5	10	100	0	50	92	0	8	0	0.40
546345--546370	10	2.6	10	100	0	52	0	38	0	61	0.96
555937--555980	22	2.0	21	83	12	54	75	0	9	15	1.05
559798--559858	29	2.1	29	93	0	104	26	11	16	45	1.81
573158--573214	18	3.2	18	85	5	71	21	19	26	33	1.97
579443--579467	13	1.9	13	100	0	50	40	4	8	48	1.51

Tables:   1   2

The End!