genome.fa.s15205.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015205.1 Kokia drynarioides strain JFW-HI SEQ_130249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  458668

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286968--287030	31	2.0	31	82	11	76	34	7	15	41	1.77
291770--291891	60	2.0	60	86	7	169	54	14	4	25	1.60
293380--293429	6	8.3	6	90	0	64	20	12	16	52	1.75
302810--303079	23	11.8	23	85	0	326	32	5	13	48	1.64
302810--303079	69	3.9	69	87	0	371	32	5	13	48	1.64
303158--303259	34	2.9	34	86	2	141	29	12	23	34	1.92
305169--305208	21	1.9	21	89	0	62	30	20	20	30	1.97
305726--305788	24	2.6	24	82	0	81	36	22	17	23	1.95
307382--307422	22	1.9	21	90	5	64	48	7	0	43	1.30
315805--315829	2	12.5	2	100	0	50	52	48	0	0	1.00
317588--317652	27	2.4	27	76	5	69	44	16	13	24	1.85
317760--317864	52	2.0	54	86	5	151	39	22	13	24	1.90
317748--317868	26	4.5	26	82	3	134	39	22	14	23	1.91
323047--323336	51	5.6	50	84	5	341	34	14	22	28	1.94
323047--323336	102	2.8	102	89	4	397	34	14	22	28	1.94
324506--324662	75	2.1	75	91	0	251	37	16	21	24	1.93
330417--330655	51	4.6	51	85	5	304	32	16	23	27	1.96
333695--333723	14	2.1	14	93	6	51	34	6	6	51	1.55
334172--334200	3	9.7	3	100	0	58	65	0	0	34	0.93
340354--340441	2	44.5	2	75	15	76	44	2	3	50	1.31
340392--340450	20	3.0	20	83	13	79	45	0	6	47	1.29
344128--344294	87	1.9	86	84	6	221	28	17	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345240--345264	6	4.2	6	100	0	50	16	0	32	52	1.44
358763--358802	20	2.0	21	85	5	55	22	20	20	37	1.94
359742--359774	2	16.5	2	93	0	57	54	0	0	45	0.99
360009--360061	15	3.7	15	77	10	65	39	0	1	58	1.09
360009--360067	28	2.1	28	100	0	118	38	0	3	57	1.15
365643--365749	52	2.0	53	92	1	180	38	13	11	37	1.80
379278--379302	13	1.9	13	100	0	50	40	0	8	52	1.31
379553--379886	52	6.4	52	91	0	515	26	15	23	33	1.95
379991--380017	2	13.5	2	100	0	54	51	48	0	0	1.00
380327--380361	18	1.9	18	88	0	52	60	22	0	17	1.37
380560--380594	6	5.8	6	96	0	61	20	45	0	34	1.51
387503--387537	18	1.9	18	94	0	61	60	20	0	20	1.37
390409--390443	18	1.9	18	94	0	61	28	5	42	22	1.76
393367--393409	12	3.8	12	79	17	56	62	18	2	16	1.43
393381--393619	9	25.3	9	66	24	70	54	17	2	24	1.56
393369--393604	21	11.3	21	71	12	146	55	17	2	23	1.55
393733--393797	34	1.9	34	90	0	103	63	4	6	26	1.38
393794--393859	33	2.0	33	87	0	96	66	16	7	9	1.42
394047--394160	54	2.1	54	88	0	165	41	9	29	19	1.83
399369--399429	30	2.0	30	100	0	122	47	3	13	36	1.59
414768--414817	12	3.9	13	77	15	59	50	0	6	44	1.26
415147--415185	20	2.0	20	85	10	53	58	5	2	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416462--416488	12	2.2	12	100	0	54	33	14	14	37	1.88
419078--419174	50	1.9	50	93	0	167	31	13	13	41	1.83
419655--419888	79	3.0	78	84	3	274	37	17	19	26	1.93
423672--423734	31	2.0	32	84	3	83	26	7	15	49	1.72
424323--424558	79	3.0	79	83	3	269	35	16	19	28	1.94
424598--424636	20	1.9	21	89	5	62	46	5	30	17	1.70
432652--432742	45	2.0	45	97	0	173	38	7	10	42	1.69
433879--433923	22	1.9	22	86	13	63	75	0	15	8	1.03
452184--452217	17	2.0	17	88	0	50	23	5	5	64	1.38
456669--456709	13	3.2	13	89	0	64	29	7	21	41	1.80
456968--457010	21	2.1	20	91	4	68	74	0	25	0	0.82
456937--456996	14	4.1	14	79	10	57	78	1	18	1	0.92
458625--458658	17	2.0	17	88	0	50	23	5	5	64	1.38

Tables:   1   2

The End!