genome.fa.s15216.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015216.1 Kokia drynarioides strain JFW-HI SEQ_130260, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  531577

Tables:   1   2   

This is table  2  of  2  ( 220 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247495--248066	281	2.0	282	85	3	776	34	10	17	38	1.84
249338--249440	41	2.5	41	85	4	129	40	15	8	34	1.78
253868--253952	42	2.0	42	93	0	143	35	14	21	29	1.92
258124--258166	22	2.0	22	85	0	59	11	13	16	58	1.64
260035--260076	5	8.4	5	94	0	57	33	19	28	19	1.96
260274--260395	39	3.2	39	76	15	96	35	1	3	59	1.23
260295--260392	18	5.2	18	71	20	51	35	0	4	60	1.16
260315--260364	23	2.1	24	85	3	66	42	0	2	56	1.11
273220--273245	3	8.7	3	100	0	52	34	34	0	30	1.58
277048--277107	29	2.1	29	87	0	84	70	0	0	30	0.88
278553--278645	39	2.4	39	80	3	98	48	25	11	13	1.77
281734--281784	15	3.5	15	74	15	52	31	9	7	50	1.64
283832--283865	3	11.3	3	100	0	68	32	0	0	67	0.91
284773--285168	157	2.5	158	82	5	471	32	7	15	45	1.73
286195--286970	156	5.0	155	83	7	975	34	12	22	29	1.92
288878--288925	22	2.2	22	96	0	87	45	18	18	16	1.85
298439--298518	23	3.5	22	81	5	88	37	26	21	15	1.92
298507--298583	23	3.3	23	80	7	77	41	22	24	11	1.87
301559--301587	2	14.5	2	100	0	58	48	0	0	51	1.00
303133--303160	3	9.3	3	100	0	56	67	0	0	32	0.91
303204--303253	25	2.0	25	84	3	66	38	2	2	58	1.21
310645--310678	11	3.2	11	91	4	52	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310645--310684	20	2.0	20	90	0	62	25	0	0	75	0.81
315582--315616	15	2.2	16	90	5	54	25	14	11	48	1.77
323721--323762	17	2.5	17	92	0	66	61	11	2	23	1.42
331301--331417	23	5.2	22	80	9	103	13	22	23	41	1.89
336028--336086	31	1.9	31	86	6	84	37	13	16	32	1.88
336026--336097	31	2.3	31	78	4	83	40	13	16	29	1.87
338022--338057	2	18.0	2	100	0	72	0	50	0	50	1.00
347637--347674	14	2.7	15	84	12	53	34	2	18	44	1.64
348685--348947	141	1.9	141	79	3	305	28	19	11	39	1.87
350276--350327	16	3.4	15	76	10	52	55	11	3	28	1.53
358165--358225	19	3.3	19	81	4	70	70	1	1	26	1.06
358166--358228	10	6.5	10	71	14	51	71	1	1	25	1.04
361535--361615	26	3.1	25	80	7	72	38	0	0	61	0.96
361552--361629	26	2.9	28	78	16	76	39	0	0	60	0.97
361612--361644	16	2.0	17	88	5	50	48	0	0	51	1.00
370886--370928	17	2.3	19	84	11	54	25	4	0	69	1.07
373668--373730	3	21.0	3	100	0	126	66	0	0	33	0.92
385978--386151	86	2.0	86	95	0	312	41	19	9	29	1.82
387917--387947	6	5.2	6	100	0	62	0	35	32	32	1.58
390274--390318	17	2.6	16	80	13	54	55	4	0	40	1.20
395789--395840	10	5.1	11	73	21	51	36	0	0	63	0.95
395807--395848	22	1.9	22	85	9	59	35	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395797--395856	31	2.0	29	87	6	84	36	0	5	58	1.20
395798--395864	31	2.2	29	84	5	80	34	0	7	58	1.26
395940--395976	15	2.5	15	91	8	58	67	0	2	29	1.04
400031--400063	17	1.9	17	88	11	50	27	3	18	51	1.60
400396--400447	27	1.9	27	84	7	70	57	0	3	38	1.17
402927--402974	23	2.0	25	84	12	64	60	0	0	39	0.97
402916--402974	25	2.3	25	82	8	66	61	0	0	38	0.96
407473--407586	32	3.7	32	75	3	81	26	2	26	44	1.67
407552--407707	62	2.5	62	88	7	226	23	0	30	44	1.58
412578--412632	27	2.0	27	100	0	110	23	21	7	47	1.76
420191--420293	36	2.9	35	81	5	116	52	11	13	22	1.72
422702--422744	20	2.2	20	83	8	52	65	0	6	27	1.18
434144--434211	30	2.3	29	85	7	84	32	2	0	64	1.08
435265--435441	59	3.0	60	81	8	193	35	22	2	40	1.66
435215--435441	30	7.6	30	81	9	171	36	23	2	37	1.68
450853--450892	20	2.0	20	85	5	53	52	10	2	35	1.48
457343--457436	36	2.6	36	93	1	154	40	18	12	28	1.87
461230--461374	60	2.4	60	83	2	184	48	17	15	18	1.82
462549--462582	3	11.3	3	93	0	59	0	0	70	29	0.87
470215--470272	31	1.9	31	89	3	91	41	8	12	37	1.73
473947--473990	15	2.9	15	72	0	52	50	0	0	50	1.00
474409--474481	29	2.4	30	93	4	121	46	1	0	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474443--474484	20	2.0	22	90	9	70	52	0	0	47	1.00
474434--474490	20	3.0	20	76	23	68	49	0	0	50	1.00
481552--481591	7	5.7	7	84	0	53	30	40	2	27	1.70
481552--481592	14	2.9	14	88	0	64	29	39	2	29	1.70
481364--481983	209	3.0	205	85	6	845	32	24	16	27	1.96
485214--485251	16	2.4	16	87	12	53	57	0	2	39	1.12
485316--485353	2	19.0	2	94	0	67	50	2	0	47	1.15
485924--485957	17	2.0	17	88	11	52	41	0	0	58	0.98
486517--486560	7	6.3	7	78	0	52	45	4	0	50	1.22
486523--486571	21	2.3	22	82	3	64	44	8	2	44	1.45
487362--487433	21	3.5	20	77	7	74	41	0	0	58	0.98
493019--493092	3	25.7	3	71	17	50	66	2	0	31	1.06
493015--493092	17	4.6	17	73	13	56	65	2	0	32	1.06
493016--493044	12	2.5	12	94	5	51	68	0	0	31	0.89
494720--494809	27	3.3	27	73	14	103	61	3	10	25	1.43
494744--494828	28	3.1	28	70	16	95	60	3	11	24	1.47
494720--494828	55	2.0	55	100	0	218	59	3	11	25	1.47
495028--495070	18	2.4	18	80	7	52	51	0	2	46	1.13
495037--495084	22	2.1	23	85	11	64	50	2	6	41	1.39
502259--502309	19	2.8	18	79	5	59	74	1	1	21	1.02
502278--502307	15	1.9	16	93	6	53	73	3	0	23	0.98
503690--503754	23	2.8	23	97	0	121	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507908--507959	24	2.2	24	85	0	68	59	7	5	26	1.48
507959--508003	23	2.0	23	82	8	56	53	0	2	44	1.13
508950--508987	19	2.0	19	94	0	67	34	42	2	21	1.67
513423--513470	22	2.2	23	85	7	64	62	2	2	33	1.18
515169--515215	21	2.3	20	85	7	60	25	8	2	63	1.34
515708--515827	57	2.1	56	83	6	152	26	10	9	53	1.66
524349--524454	12	9.1	12	68	5	56	67	19	6	5	1.34
524349--524406	24	2.5	24	80	2	73	68	20	6	3	1.27
524361--524484	35	3.7	34	76	16	84	65	20	7	6	1.40
524449--524499	22	2.3	22	82	0	57	58	21	7	11	1.58
524466--524520	22	2.5	22	79	5	58	61	20	7	10	1.52
529291--529371	35	2.3	35	100	0	162	35	0	41	22	1.54

Tables:   1   2

The End!